Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62440 88 / 9e-20 Protein of unknown function (DUF3223) (.1) AT2G40030 45 / 0.0002 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024794 [exp] 673 / 0 AT5G62440 95 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10024824 [exp] 598 / 0 AT5G62440 84 / 8e-19 Protein of unknown function (DUF3223) (.1) Lus10024968 [exp] 597 / 0 AT5G62440 90 / 1e-20 Protein of unknown function (DUF3223) (.1) Lus10011903 [exp] 430 / 1e-146 AT5G62440 96 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10022837 [exp] 272 / 2e-85 AT5G62440 86 / 4e-19 Protein of unknown function (DUF3223) (.1) Lus10002053 [exp] 262 / 9e-82 AT5G62440 98 / 2e-23 Protein of unknown function (DUF3223) (.1) Lus10023594 [exp] 219 / 3e-67 AT5G62440 96 / 1e-23 Protein of unknown function (DUF3223) (.1) Lus10021669 [exp] 96 / 1e-22 AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1) Lus10035009 [exp] 96 / 3e-22 AT5G62440 179 / 5e-57 Protein of unknown function (DUF3223) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033100 [exp] 83 / 8e-18 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 77 / 6e-16 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 67 / 9e-13 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1) Potri.001G111300 [exp] 48 / 2e-05 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.001G027232 [exp] 44 / 0.0002 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Lus10009570 pacid=23145748 polypeptide=Lus10009570 locus=Lus10009570.g ID=Lus10009570.BGIv1.0 annot-version=v1.0 ATGTCCAATCCAGAGGAAGATATGAAGCGGCGAGCCAGCGAGGAAATTGGGGAAGCAGCGAGCGGCGGCCATGGTGTCGGTAAGAAGCAGAAGCTGGAAA ANNGGGAAAGCGACGAGGTCGGGAACGAGGCGGTGGTTGTCCGTTTGGGTACGAAGGAATTCACGAGCTCCCGTCAGATGTTTGAAACTGTCCGATCGTG GCTTAGATTCTACTCAGTTCAACCTTTGATCAGCAACCATGATTGCGACGCTATGTTACTGGACTTGGTGAAGAAGGGTCATCCCGACTCAGATACGTTA ATTGGTTCCGGGGTCGCTTCATTCAAAGTCCGACAGAAATACATGTGCAGCGACTTACTCACGTTCATGGTTGTTAGGGAAGACGATTCCAAGGAGGAGT TTTGCTACAGAAGCTGTGTAAACAATATCCTTCCATTGCCTGAGGATTTGAAAGATCAAGGTAGCGGTGTTGTCGCTGTTTGTGGATGTCATGTAGAAGG AGGCATGTGGGGTTTGTACAGTAGAAGATCAGACGAGCTTGCTGAAATATATAAACGACTTAAACAAGACCGAGAAGCCAAGCTAGACGAAGAGGCGGTA AAATTGGTCTCCTTGGGTCCAAAGAAATTCAGGTCCTCCCATCAGATGTATTCGTTCTTTTTCGACTTGCTTATCAGGTTGCCGCTTAATGAGGCTCTCG TCGAGGAGAATGCCCACGAGATGTTACATGATTTACTGAAGAAGGGCGATCCAGAATCGGGGAAAAAGATTGGTTCTTCTGGTGTCGAATCATTTCAAGT TCGAATCCATCCAGGATATGGTGGTAATCTGCGAAGCTTCTACTTTGTTAGAGGAGATGGTTCCATGGAGGATTTCTGTTTCATTAAGTGCGTTGACGGC ATCTTTCCCATTCCAGAGAAAGCCAACAGAATATATGTTGGTCCTTGTAGCTGTCATCATGAACAAGACTCTGAAGGTGTTGTCACCTTGGGTTGGTGGA AATTCCGGAGTTCCAATCGAATTGTTTCGTTTTTCGCATCGTTGCTTGACGATGATTTTCATGGTTTTGATCCTCTCGCTGACCGGGTAAGTCATGGGGA TGCCATTTATCAGTTTGGTCCAAGACTTAACCGAACGGCAGTGTTGGATTTTCTGAAAAAGGGTGATCCAGAGACGTGGGAGAAGAAGATGGGTTCTGGA GGGGGTATCCAGTCAATCACAATGCAACCCCACACAAACGAAAAAATTCGTAGGTTGGGACACTGTTTATTCGTCGTTGTTCAGAGCGATGGTTCGTCGG AATCTTTCTGCTCCTGGACATGCGTGAACAACCTGTCTTCCCTGCTTGAAGGAGGAGGAGCTAATGGTGGCACTGGTGGAGGAAGAGCCAGAAGTGGCAC TGGTGGAGGAAGAACCAGAAGTGGCACTGGTGGAGGAAGCCGTCCTCGCAATGGAGGAAGAGCCAAAAGTGGCGCTGGTGAAGGAAGCCGTCGCCGTAGC ACTCGCCTACGTACTTTGGTTTGA
AA sequence Show only first row Show all	>Lus10009570 pacid=23145748 polypeptide=Lus10009570 locus=Lus10009570.g ID=Lus10009570.BGIv1.0 annot-version=v1.0 MSNPEEDMKRRASEEIGEAASGGHGVGKKQKLEXXESDEVGNEAVVVRLGTKEFTSSRQMFETVRSWLRFYSVQPLISNHDCDAMLLDLVKKGHPDSDTL IGSGVASFKVRQKYMCSDLLTFMVVREDDSKEEFCYRSCVNNILPLPEDLKDQGSGVVAVCGCHVEGGMWGLYSRRSDELAEIYKRLKQDREAKLDEEAV KLVSLGPKKFRSSHQMYSFFFDLLIRLPLNEALVEENAHEMLHDLLKKGDPESGKKIGSSGVESFQVRIHPGYGGNLRSFYFVRGDGSMEDFCFIKCVDG IFPIPEKANRIYVGPCSCHHEQDSEGVVTLGWWKFRSSNRIVSFFASLLDDDFHGFDPLADRVSHGDAIYQFGPRLNRTAVLDFLKKGDPETWEKKMGSG GGIQSITMQPHTNEKIRRLGHCLFVVVQSDGSSESFCSWTCVNNLSSLLEGGGANGGTGGGRARSGTGGGRTRSGTGGGSRPRNGGRAKSGAGEGSRRRS TRLRTLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62440			Protein of unknown function (D...		Lus10009570 [exp]	0	1
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	1.4	0.9101
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10037143 [exp]	4.6	0.8440
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	4.9	0.8665
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10022459 [exp]	6.5	0.8582
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	11.3	0.8540
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	11.5	0.8482
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	14.0	0.8487
AT3G14280			unknown protein		Lus10037453 [exp]	15.4	0.8225
AT1G11050			Protein kinase superfamily pro...		Lus10001295 [exp]	16.0	0.8372
AT1G77370			Glutaredoxin family protein (....		Lus10028355 [exp]	19.2	0.8351

Compare expression of checked genes

Lus10009570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.