Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17010 619 / 0 Major facilitator superfamily protein (.1.2.3.4) AT3G03090 592 / 0 ATVGT1 vacuolar glucose transporter 1 (.1) AT5G59250 503 / 8e-173 Major facilitator superfamily protein (.1) AT5G63670 199 / 2e-61 SPT42 SPT4 homolog 2 (.1.2) AT5G08565 197 / 1e-60 Transcription initiation Spt4-like protein (.1.2) AT5G27360 189 / 3e-53 SFP2 Major facilitator superfamily protein (.1) AT3G05150 179 / 1e-49 Major facilitator superfamily protein (.1) AT3G18830 179 / 6e-49 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT5G27350 172 / 3e-47 SFP1 Major facilitator superfamily protein (.1) AT4G36670 171 / 1e-46 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016505 [exp] 488 / 8e-167 AT5G59250 758 / 0.0 Major facilitator superfamily protein (.1) Lus10040772 [exp] 275 / 2e-88 AT5G59250 387 / 4e-133 Major facilitator superfamily protein (.1) Lus10020394 [exp] 239 / 2e-76 AT5G63670 205 / 5e-70 SPT4 homolog 2 (.1.2) Lus10023640 [exp] 181 / 4e-50 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10025565 [exp] 173 / 5e-47 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10029962 [exp] 172 / 1e-46 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10018581 [exp] 171 / 3e-46 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10033702 [exp] 171 / 5e-46 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1) Lus10031637 [exp] 170 / 1e-45 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G055600 [exp] 694 / 0 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Potri.001G244100 [exp] 507 / 1e-174 AT5G59250 598 / 0.0 Major facilitator superfamily protein (.1) Potri.010G255000 [exp] 206 / 6e-64 AT5G63670 212 / 6e-73 SPT4 homolog 2 (.1.2) Potri.008G002400 [exp] 202 / 1e-62 AT5G63670 210 / 5e-72 SPT4 homolog 2 (.1.2) Potri.013G135200 [exp] 181 / 6e-50 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 171 / 2e-46 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G032200 [exp] 169 / 1e-45 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.002G212900 [exp] 167 / 2e-45 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.009G113600 [exp] 165 / 4e-44 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G027500 [exp] 164 / 4e-44 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter CL0167 [flax] [poplar] Zn_Beta_Ribbon PF06093 [flax] [poplar] Spt4 Spt4/RpoE2 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10009573 pacid=23145701 polypeptide=Lus10009573 locus=Lus10009573.g ID=Lus10009573.BGIv1.0 annot-version=v1.0 ATGGGAAGCAGCCACCAGCCAGCTCAGGCAGCGCAGATTCCGACGAGCTTCGGCCACGAACTGCGAGCATGTCTCCGATGCCGCCTTGTCAAGACTTACG ACCAGTTCAGAGATTCCGGGTGCGAGAACTGCCCGTTTTTCAAGCTGGAGGAAGATCATGAGCGCGTTGTCGAATGCACGACTCCCAATTTCAATGGGGT GATTTCTGTTATGGATCCAACGAGAAGCTGGGCAGCTCGATGGTTGAGAATTGCAAGATTCGTCCCTGGTTGCTACACTCTTGCGGTTTCAGAGGCTCTC TCCGAGGACATGCAGGTCGGGAAGTCTTCCGGTGAGATTGATGGCGCTGGTGTGGAGGAGCCTTTACTGAGTCGTGTTCTGCACCACAAGGAGAATTATT CTGTTATGTCTGCAGTCTTACCGTTTCTGTTTCCAGCTCTTGGAGGAATGTTATATGGTTATGACATCAGTTCCACGTCAAGTGCTACGATATCCATTCA GTCAGCTACCTCTAGTGGGATTTCCTGGTACCACTTGAGTTCTGTGGAAATTGGACTCATTACAAGTGGCTCATTATATGGTGCCCTTATTGGATCTGTC TTGGCCTTCAACATTGCTGACTTTCTTGGGAGAAGAAAGGAGTTGCTGCTGTCTGCTGCCTTGTATCTTGTTGGGGCCCTGATAACAGCCGTAGCTCCTC ACCTGGTCGTTCTGATCATTGGACGTGTTGTGTTTGGTATTGGAATAGGATTGGCAATGCATGCTGCTCCAATGTACATTGCTGAGACAGCTCCCAGCCC AATACGCGGTCAACTGATATCTATGAAAGAATTATTAATAGTCTTAGGCATGTTGGTTGGCTATGTCATTGGGAGTCTCTTGGTCGAGACTTTAGCTGGC TGGCGTTACATGTACGGAGCAAGTACACCTTTGGCAGTGATCATGGGGATTGGGATGTGGTGGCTACCCGAATCACCCAGATGGCTCCTACTGTGTGCAA TTCAGCATAAAGGTGATAGAGAAAATTTGAAAGAAACTGCTATATGCTGTCTGTGCCAGCTCAGGGGCGCAGCCATTGGAGATGCTGCTCCAGATGAAGT GGAAGAGATCCTTCATGAGCTTGCTGGCGTTGGAGAGGAGAACAAAGTTGCATTTGGGGAAGTGTTCCGAGGGAAATGCTTGAAGGCCCTTACAATCGGT TGTGGACTGGTGCTGTTTCAGCAGATCACAGGGCAACCTAGTGTGTTGTATTACGCTGCATCAATTCTTCAGGGTGCCGGATTCTCTGCAGCTTCTGATG CTACTCGTGTCTCGATTCTGCTCGGTTTATTGAAGAATGCATCTTCTTTCTACATGCTGCATAATGTGCCGGTTCTTTCTGATGCACGATTACTTGCGTC GCAGTTAATCATGACCGGGGTAGCAGTCCTCGCGGTTGATAAATTCGGAAGGAGACCTTTGCTACTTGGTGGCGTTACTGGGATTACTATCTCTTTATTC CTTCTGGGATCATATTACATCTTCCTCGATAATGCACCCCTCTTGGCTGTAGCTGCATTGCTGGTATACGTTGGATGTTATCAGCTATCCTTTGGTCCTA TCGGCTGGCTGATGATATCCGAGATTTTCCCGCTACGACTCAGAGGCCGAGGACTCAGCGTGGCTGTGCTCGTGAACTTCGGCTCAAATGCATTGGTCAC ATTTGCATTCTCTCCATTGGAGGCATGGCTCGGGGCAGGAACGCTGTTCTACGTGTTCGGAGTGATAGGCCTCGTGTCTCTCCTCTTCATATACTTCATC GTCCCGGAGACGAAGGGGCTCACCCTCGAGGAGATCGAGGCCAAATGCTTGTAA
AA sequence Show only first row Show all	>Lus10009573 pacid=23145701 polypeptide=Lus10009573 locus=Lus10009573.g ID=Lus10009573.BGIv1.0 annot-version=v1.0 MGSSHQPAQAAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKLEEDHERVVECTTPNFNGVISVMDPTRSWAARWLRIARFVPGCYTLAVSEAL SEDMQVGKSSGEIDGAGVEEPLLSRVLHHKENYSVMSAVLPFLFPALGGMLYGYDISSTSSATISIQSATSSGISWYHLSSVEIGLITSGSLYGALIGSV LAFNIADFLGRRKELLLSAALYLVGALITAVAPHLVVLIIGRVVFGIGIGLAMHAAPMYIAETAPSPIRGQLISMKELLIVLGMLVGYVIGSLLVETLAG WRYMYGASTPLAVIMGIGMWWLPESPRWLLLCAIQHKGDRENLKETAICCLCQLRGAAIGDAAPDEVEEILHELAGVGEENKVAFGEVFRGKCLKALTIG CGLVLFQQITGQPSVLYYAASILQGAGFSAASDATRVSILLGLLKNASSFYMLHNVPVLSDARLLASQLIMTGVAVLAVDKFGRRPLLLGGVTGITISLF LLGSYYIFLDNAPLLAVAALLVYVGCYQLSFGPIGWLMISEIFPLRLRGRGLSVAVLVNFGSNALVTFAFSPLEAWLGAGTLFYVFGVIGLVSLLFIYFI VPETKGLTLEEIEAKCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17010			Major facilitator superfamily ...		Lus10009573 [exp]	0	1
AT2G43970			RNA-binding protein (.1.2)		Lus10025608 [exp]	2.8	0.9328
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10015826 [exp]	2.8	0.9543
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10033151 [exp]	4.2	0.9321
AT2G02850		ARPN	plantacyanin (.1)		Lus10041850 [exp]	5.1	0.9252
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	5.3	0.9509
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	7.1	0.9472
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	9.5	0.9344
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	10.5	0.9318
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	11.1	0.9436
AT3G10120			unknown protein		Lus10039676 [exp]	12.5	0.9275

Compare expression of checked genes

Lus10009573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.