Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04830 224 / 5e-77 ATMSRB5 methionine sulfoxide reductase B5 (.1.2) AT4G21860 223 / 1e-75 MSRB2 methionine sulfoxide reductase B 2 (.1.2.3) AT4G04800 213 / 3e-72 ATMSRB3 methionine sulfoxide reductase B3 (.1) AT4G04810 212 / 4e-72 ATMSRB4 methionine sulfoxide reductase B4 (.1) AT4G21840 201 / 6e-68 ATMSRB8 methionine sulfoxide reductase B8 (.1) AT4G21850 201 / 6e-68 ATMSRB9 methionine sulfoxide reductase B9 (.1.2) AT4G21830 200 / 2e-67 ATMSRB7 methionine sulfoxide reductase B7 (.1.2) AT4G04840 188 / 1e-62 ATMSRB6 methionine sulfoxide reductase B6 (.1) AT1G53670 110 / 4e-31 MSRB1, ATMSRB1 methionine sulfoxide reductase B 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007105 [exp] 243 / 2e-83 AT4G21860 251 / 2e-85 methionine sulfoxide reductase B 2 (.1.2.3) Lus10020486 [exp] 243 / 3e-83 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3) Lus10013727 [exp] 110 / 4e-31 AT1G53670 253 / 2e-86 methionine sulfoxide reductase B 1 (.1.2) Lus10005593 [exp] 108 / 3e-30 AT1G53670 246 / 1e-83 methionine sulfoxide reductase B 1 (.1.2) Lus10007106 [exp] 59 / 5e-11 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198600 [exp] 242 / 4e-84 AT4G04830 221 / 1e-75 methionine sulfoxide reductase B5 (.1.2) Potri.009G080700 [exp] 239 / 7e-82 AT4G21860 253 / 7e-86 methionine sulfoxide reductase B 2 (.1.2.3) Potri.001G286500 [exp] 237 / 6e-81 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3) Potri.011G114300 [exp] 97 / 5e-26 AT1G53670 231 / 7e-78 methionine sulfoxide reductase B 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0080 [flax] [poplar] Beta-tent PF01641 [flax] [poplar] SelR SelR domain
Representative CDS sequence Show only first row Show all	>Lus10009574 pacid=23145704 polypeptide=Lus10009574 locus=Lus10009574.g ID=Lus10009574.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTGGTTCCGTCCAGAAAACAGAGGAAGAGTGGCGCGCCGTTCTCAATCCAGAACAGTTCAGAATCCTCCGCGAGAAAGGAACAGAGCCGA AATTCACAGGGGAATACGACAAGTTCTTCGAGGAAGGCGTTTACAGCTGCGCAGGATGCGGGACGCCTCTGTATAAATCGGCTACCAAGTTCAATTCGGG GTGTGGTTGGCCTGCTTTCTACGACGGACTCCCTGGAGCCATCAATCGCTCTCCGGATCCTGATGGGAGGAGGACGGAGATAACGTGCGCGGCTTGCGGT GGGCACTTGGGCCATGTTTTCAAGGGTGAAGGATTCGAGAACCCGATTGACGAGCGCCATTGTGTTAACAGCGTCTCGATCAAGTTCGCTCCTGGAAATT GA
AA sequence Show only first row Show all	>Lus10009574 pacid=23145704 polypeptide=Lus10009574 locus=Lus10009574.g ID=Lus10009574.BGIv1.0 annot-version=v1.0 MAAAGSVQKTEEEWRAVLNPEQFRILREKGTEPKFTGEYDKFFEEGVYSCAGCGTPLYKSATKFNSGCGWPAFYDGLPGAINRSPDPDGRRTEITCAACG GHLGHVFKGEGFENPIDERHCVNSVSIKFAPGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Lus10009574 [exp]	0	1
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10021002 [exp]	6.7	0.9301
AT3G24170		ATGR1	glutathione-disulfide reductas...		Lus10000758 [exp]	7.5	0.9537
AT5G40690			unknown protein		Lus10010488 [exp]	8.9	0.9548
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10030321 [exp]	18.6	0.9258
AT1G62420			Protein of unknown function (D...		Lus10003258 [exp]	22.9	0.9501
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10009988 [exp]	23.2	0.9528
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10010391 [exp]	24.2	0.9419
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	27.6	0.9525
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	32.2	0.9521
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10008742 [exp]	33.2	0.9501

Compare expression of checked genes

Lus10009574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.