Plant FIBer expression Database

Lus10009575 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44870 216 / 2e-70 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020395
[exp]
369 / 3e-129 AT2G44870 181 / 1e-55 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G030100
[exp]
264 / 4e-89 AT2G44870 249 / 3e-83 unknown protein
PFAM info
Representative CDS sequence
>Lus10009575 pacid=23145744 polypeptide=Lus10009575 locus=Lus10009575.g ID=Lus10009575.BGIv1.0 annot-version=v1.0
ATGGCCGCCGGTTTGCTCCGCCACCATCCTCTCCCGCCGCGCCTCCCGCCTCCCACCCCATGCCTCCTCCGCCGCGGCCACGTCACTCTTCCGACTGTCT
CGTTCCGCCGCCGTGTCCCCGTCGTGCGGGCTTCCGGGGGCAACGGAGACTTCGACAGGTTCGCGCGGAAAGCCTGGCGTACCGCGAACGACGGATTTGA
GCTGTTTCTGTTCGAGGCGAAGAAGACCGTGGAGCGCATTGACAGGAAATACTCCGTCGGGAAACGGCTTAGCGTTGTGACGCAGTCTGCTGTAGATAGG
GCGCGTTTGATCGATAGGGATTTCAATCTCACTCCTCGCTGGCGTGCCTTCTCCATGGATTTCTCTAGAAATTGGCCTAGGTACAGGAAGCAGCTCAGTG
ACTTGATGAATACTCCGCTGGGAAGAGTTTTCTATGCGATGTTCTTCCTCTGGTTTGCTCTATCAGGGTGGCTGTTTCGGTTCCTCATATTTGGTTCATT
TGTTCTGCCACTCGCGGGGCCTCTTATCATAGCCGCTATTGGGAATAATTTTGTCATCAAGGGTTCTTGTCCAGCTTGTAAACAGGATTTCATGGGCATA
AAAACCCGGCAAATACGCTGCACCGGGTGTGGCAACATTGTCTGGTACCCTGAAGATTCAGGAGGCGGCAGTGGCCCCGGTAAGCAAGGAGGCCGACCTT
CAAAGTCCGATCCTAACATAATCGACGTGGAGTTCGAAGAGAGATAA
AA sequence
>Lus10009575 pacid=23145744 polypeptide=Lus10009575 locus=Lus10009575.g ID=Lus10009575.BGIv1.0 annot-version=v1.0
MAAGLLRHHPLPPRLPPPTPCLLRRGHVTLPTVSFRRRVPVVRASGGNGDFDRFARKAWRTANDGFELFLFEAKKTVERIDRKYSVGKRLSVVTQSAVDR
ARLIDRDFNLTPRWRAFSMDFSRNWPRYRKQLSDLMNTPLGRVFYAMFFLWFALSGWLFRFLIFGSFVLPLAGPLIIAAIGNNFVIKGSCPACKQDFMGI
KTRQIRCTGCGNIVWYPEDSGGGSGPGKQGGRPSKSDPNIIDVEFEER

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G44870 unknown protein Lus10009575
[exp]
0 1
AT1G22850 SNARE associated Golgi protein... Lus10006162
[exp]
2.8 0.8900
AT1G17100 SOUL heme-binding family prote... Lus10041532
[exp]
9.3 0.8791
AT1G16080 unknown protein Lus10041625
[exp]
9.3 0.8890
AT1G64890 Major facilitator superfamily ... Lus10024977
[exp]
9.8 0.8657
AT5G23060 CaS calcium sensing receptor (.1) Lus10000867
[exp]
19.0 0.8669
AT1G29700 Metallo-hydrolase/oxidoreducta... Lus10035042
[exp]
21.5 0.8675
AT1G17100 SOUL heme-binding family prote... Lus10012559
[exp]
23.7 0.8589
AT2G44870 unknown protein Lus10020395
[exp]
24.3 0.8047
AT1G74520 ATHVA22A HVA22 homologue A (.1) Lus10023605
[exp]
26.7 0.8496
AT1G14345 NAD(P)-linked oxidoreductase s... Lus10037201
[exp]
27.1 0.8644

Lus10009575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.