Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36740 303 / 3e-101 ATSWC2 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020396 [exp] 493 / 5e-176 AT2G36740 411 / 1e-143 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G412800 [exp] 337 / 9e-115 AT2G36740 350 / 7e-120 sequence-specific DNA binding transcription factors;DNA binding;DNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05764 [flax] [poplar] YL1 YL1 nuclear protein
Representative CDS sequence Show only first row Show all	>Lus10009576 pacid=23145752 polypeptide=Lus10009576 locus=Lus10009576.g ID=Lus10009576.BGIv1.0 annot-version=v1.0 ATGGAGACCTCCAAAGAAGACGATGCGCCGGTTGTGTTCCTCGACAGAACAGCTCGCGCCACCAGAGGCAAGAGGATGACGAAACTGCTAGATGATGAAG TTGAAGAGGATGAGACATTCTGGAACCAGGACGCTCTGAAAGAGGATGAAAATGATGATAACTATCAAGAAGAGCCTGAAGCTCCAGACGAATTCGATAG CGATTTCGATGAGGATGAGCCTGAGCCGGATGATGAAGCTGAAAATGAGGCAATGGAGAAGAGGCCTCCGAAGAAGAGGCTTATATTCCCTGGGAAGACT CTTCCCAAAAAGAAGAAGAAGAAAGAGTTGTCGAAGTTGGATACCGAGACTTCTCCGAGAGATGTGAAGCCAGATGAGCAGACTACTACTACTACCCCTG AGCACCATGATGTCCCTGACGAGGTTGAAGGTGAGAGAGTTGTGAGGAAGTCTACGAGGACGTCAGTTATCGTCAGGCAAGCCGAGAGGGACGCAATACG TGCTGCTTTGCAGGCGACTATGAAGCCAATAAAAAGGAAAAAGGAAGGGGAGGAGAAAAAAATGTCACAAGAAGAAATGCTTCTTGAAGCAGCCCAAACA GAAATAATGAATTTGAGGAACTTAGAGCGTGTCTTAGCAAGGGAGGAAGAAGTCAAGAAAAGAGCTGCTGTGAACAAGGCAGTATATAGTGGCCCGCAGA CTCGGTTCTCTTCCAAGGACGGTCGTACAATTCTTGAATTCAAAGGAATTTCATTTCATTCCCAGCTTTCAACAACTCCTGTTCCATATGTCCGTTCTGA TCTCCTGTCTCTTTCATTGCCAGATCCGGAGAAGGCTGTATGTGTTATAACAGGATTGCCTGCCAAGTTTGAGGAAGAGAGGAACAAGAACCTCAACAAA GAGATGGACATGGGCGTCCTGTTCGATGCACTAAAGGGGAAAGGATTCTTGATCAGGAAGAAACGTTCTCCGTTTTTCGCCATAAAGAAGAACACCCACT TCTCGTACTTCCCTCCTCCCAGGATACCAATCATTGAATTCGATGATTCGGACTGA
AA sequence Show only first row Show all	>Lus10009576 pacid=23145752 polypeptide=Lus10009576 locus=Lus10009576.g ID=Lus10009576.BGIv1.0 annot-version=v1.0 METSKEDDAPVVFLDRTARATRGKRMTKLLDDEVEEDETFWNQDALKEDENDDNYQEEPEAPDEFDSDFDEDEPEPDDEAENEAMEKRPPKKRLIFPGKT LPKKKKKKELSKLDTETSPRDVKPDEQTTTTTPEHHDVPDEVEGERVVRKSTRTSVIVRQAERDAIRAALQATMKPIKRKKEGEEKKMSQEEMLLEAAQT EIMNLRNLERVLAREEEVKKRAAVNKAVYSGPQTRFSSKDGRTILEFKGISFHSQLSTTPVPYVRSDLLSLSLPDPEKAVCVITGLPAKFEEERNKNLNK EMDMGVLFDALKGKGFLIRKKRSPFFAIKKNTHFSYFPPPRIPIIEFDDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10009576 [exp]	0	1
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019618 [exp]	5.7	0.7325
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	8.1	0.8167
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	11.5	0.7779
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10011130 [exp]	16.5	0.7471
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	18.0	0.7471
AT2G48100	C2H2ZnF		Exonuclease family protein (.1...		Lus10042687 [exp]	18.1	0.7666
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	18.8	0.7757
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	26.6	0.7720
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	29.6	0.7736
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	35.6	0.7639

Compare expression of checked genes

Lus10009576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.