Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49010 350 / 2e-124 RSU2, ATBBC1 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) AT5G23900 330 / 2e-116 Ribosomal protein L13e family protein (.1) AT3G48960 311 / 3e-109 Ribosomal protein L13e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020398 [exp] 395 / 3e-142 AT3G49010 351 / 5e-125 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Lus10013719 [exp] 392 / 3e-141 AT3G49010 352 / 3e-125 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Lus10005586 [exp] 392 / 3e-141 AT3G49010 352 / 3e-125 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G131000 [exp] 352 / 2e-125 AT3G49010 353 / 7e-126 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Potri.016G082300 [exp] 350 / 2e-124 AT3G49010 343 / 5e-122 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Potri.003G102800 [exp] 349 / 3e-124 AT3G49010 347 / 2e-123 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Potri.013G027600 [exp] 348 / 8e-124 AT3G49010 347 / 4e-123 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01294 [flax] [poplar] Ribosomal_L13e Ribosomal protein L13e
Representative CDS sequence Show only first row Show all	>Lus10009578 pacid=23145691 polypeptide=Lus10009578 locus=Lus10009578.g ID=Lus10009578.BGIv1.0 annot-version=v1.0 ATGAAGCATAACAACGTTATCCCCAACGGCCACTTCAAGAAGCACTGGCAGAACTATGTGAAGACATGGTTCAACCAGCCTGCTCGCAAGACCCGTAGAC GCGTTGCTCGTCAGACTAAGGCTGTGAAGATATTCCCCAGGCCGACTGCAGGACCTCTTCGTCCAATTGTCCATGGACAGACTCGCAAGTACAACATGAA GCTCAAGGCTGGAAGAGGGTTCACTCTTGAGGAACTCAAGGCTGCTGGTATTCCGAAGAAGCTTGCACCCACCATCGGAATTGCAGTTGATCACAGGAGG AAGAACAGATCTTTGGAGGGTCTGCAGGCCAATGCTCAGAGGCTTAAGACCTACAAGGCCAAGCTTGTTGTCTTCCCAAGGAGAGCTCGCAAGGTTAAGG CTGGGGATTCTGCACCTGAGGAGTTGGCAACTGCCACTCAAGTCCAGGGAGACTTCCTGCCAATCCAACGTGAGCAGCCAACTGTGGAGCTTGTGAAGGT GACTGCCGAGATGAAGGCGGTCAAGGCATACGACAAGCTGAGGTTGGAGAGGACTAACCAGCGCCACAATGGTGCGAGGTTGAAGAAGGCTGAGGATGCA GCGAAAGATGAGAAGAAGTAG
AA sequence Show only first row Show all	>Lus10009578 pacid=23145691 polypeptide=Lus10009578 locus=Lus10009578.g ID=Lus10009578.BGIv1.0 annot-version=v1.0 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQTKAVKIFPRPTAGPLRPIVHGQTRKYNMKLKAGRGFTLEELKAAGIPKKLAPTIGIAVDHRR KNRSLEGLQANAQRLKTYKAKLVVFPRRARKVKAGDSAPEELATATQVQGDFLPIQREQPTVELVKVTAEMKAVKAYDKLRLERTNQRHNGARLKKAEDA AKDEKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	0	1
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10013381 [exp]	1.4	0.9305
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10012599 [exp]	2.0	0.9084
AT2G27710			60S acidic ribosomal protein f...		Lus10043377 [exp]	2.4	0.9053
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Lus10004871 [exp]	2.6	0.9049
AT1G09690			Translation protein SH3-like f...		Lus10030882 [exp]	3.5	0.9099
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	3.7	0.9201
AT1G50920			Nucleolar GTP-binding protein ...		Lus10027370 [exp]	4.2	0.8924
AT3G12150			unknown protein		Lus10035501 [exp]	4.5	0.8873
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	6.7	0.9057
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	7.5	0.8962

Compare expression of checked genes

Lus10009578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.