Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48480 111 / 2e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020399 [exp] 275 / 5e-96 AT5G48480 110 / 4e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10009580 [exp] 256 / 8e-89 AT5G48480 112 / 4e-32 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10020400 [exp] 255 / 4e-88 AT5G48480 111 / 2e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10002100 [exp] 46 / 3e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G251200 [exp] 166 / 6e-53 AT5G48480 91 / 2e-23 Lactoylglutathione lyase / glyoxalase I family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF06983 [flax] [poplar] 3-dmu-9_3-mt 3-demethylubiquinone-9 3-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10009579 pacid=23145728 polypeptide=Lus10009579 locus=Lus10009579.g ID=Lus10009579.BGIv1.0 annot-version=v1.0 ATGGCGCAACAAGTTGCTGAGGTCCACAATGGTGCTTCCGAAAAGGCAGAGGTTGCGGTGTCTTTCACCTCGGTGAAGCCGCAGCTGATGGTGGAGGCGC CCAAGGCTAATGACGCTGTGGAGTTCTACAAGGCTGCTTTCGGTGCTGTGGAGACTGGCCGTACGACTCATCCTAAGCGCAAGGCTGACCAGGAGCTTCC TCAGATCATCTCGGCTCAGCTCCAGCTCGCCGGCACCACCATCCTCGTCTCTGACCATTCTGGCGACTCTGCTCCAGTTGGAAATGGTCTGTCACTCTGC TTGGAGACTAACGACGTGGATGCCGCAGTTTCCAAGGCCATCGCTGCCGGAGCTACCTCCGAGGATGGCGAGACCACTGAGTCGGACCGCGCGTGCTGTG GAGGTCGCGTGGGGAGGAAAGTGAAGGATCCTTGTGGATTTGTTTGGCTCATCTGCTCTCCAGCTACAGCCTCTGCTGCTGAGGTGGAGGCTTGA
AA sequence Show only first row Show all	>Lus10009579 pacid=23145728 polypeptide=Lus10009579 locus=Lus10009579.g ID=Lus10009579.BGIv1.0 annot-version=v1.0 MAQQVAEVHNGASEKAEVAVSFTSVKPQLMVEAPKANDAVEFYKAAFGAVETGRTTHPKRKADQELPQIISAQLQLAGTTILVSDHSGDSAPVGNGLSLC LETNDVDAAVSKAIAAGATSEDGETTESDRACCGGRVGRKVKDPCGFVWLICSPATASAAEVEA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	0	1
AT1G79060			unknown protein		Lus10031795 [exp]	3.2	0.9520
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	3.3	0.9526
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008535 [exp]	5.9	0.9297
AT1G04150			C2 calcium/lipid-binding plant...		Lus10000164 [exp]	6.0	0.9321
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	6.2	0.9405
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033951 [exp]	9.5	0.9217
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019870 [exp]	10.4	0.9251
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10009533 [exp]	11.0	0.9355
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10037626 [exp]	11.2	0.8662
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	11.5	0.9403

Compare expression of checked genes

Lus10009579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.