Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48480 112 / 5e-32 Lactoylglutathione lyase / glyoxalase I family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020400 [exp] 288 / 5e-101 AT5G48480 111 / 2e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10009579 [exp] 256 / 8e-89 AT5G48480 111 / 2e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10020399 [exp] 246 / 8e-85 AT5G48480 110 / 4e-31 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10002100 [exp] 42 / 6e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G251200 [exp] 166 / 4e-53 AT5G48480 91 / 2e-23 Lactoylglutathione lyase / glyoxalase I family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF06983 [flax] [poplar] 3-dmu-9_3-mt 3-demethylubiquinone-9 3-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10009580 pacid=23145742 polypeptide=Lus10009580 locus=Lus10009580.g ID=Lus10009580.BGIv1.0 annot-version=v1.0 ATGGCGGAACAAGCTGATGTCCACATTGGAGGTGCCGAGAAGGCCGAGGTGGTGGTCTCCTTCACCGCCGTGAAGCCGCAGCTGCTGGTGGAGGCATCCA AGGTTAACGACGCTGTCGAGTTCTACAAGGCTGCTCTCGGTGCTGTGGAGACTGGCCGTACCACTCATCCCAAGCGCAAGGCGGACCAGGAGCTCCCTCA GATCATCTCCGCTCAGCTCCAGCTCGCCGGCACCACCATCCTCGTCTCTGACCATTCTGGCGACTCTGCTCCTGTCGGAACCGGACTGTCACTCTGCTTG GAGACTAATGACGTCGATGCCGCCGTATCAAAGGCCATCGTAGCAGGAGCTACCTCAGAGGGAGAGATCGCTGAGTCTGACGGCGCGTGCTGTGGAGGTC GCGTGGGAAAAGTGAAGGATCCATACGGATTTGTGTGGTTCATCTGCTCCTCCTCCTCCCCAGCTCCCAAGTGTGGTGAAACTGAAGTGGAAGCTTGA
AA sequence Show only first row Show all	>Lus10009580 pacid=23145742 polypeptide=Lus10009580 locus=Lus10009580.g ID=Lus10009580.BGIv1.0 annot-version=v1.0 MAEQADVHIGGAEKAEVVVSFTAVKPQLLVEASKVNDAVEFYKAALGAVETGRTTHPKRKADQELPQIISAQLQLAGTTILVSDHSGDSAPVGTGLSLCL ETNDVDAAVSKAIVAGATSEGEIAESDGACCGGRVGKVKDPYGFVWFICSSSSPAPKCGETEVEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009580 [exp]	0	1
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10035904 [exp]	1.4	0.9232
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	2.0	0.9068
AT1G15190			Fasciclin-like arabinogalactan...		Lus10023183 [exp]	2.4	0.9255
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004302 [exp]	3.7	0.9005
AT2G30620			winged-helix DNA-binding trans...		Lus10006562 [exp]	8.3	0.9219
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	8.9	0.8970
AT3G20390			endoribonuclease L-PSP family ...		Lus10040074 [exp]	11.4	0.8713
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005893 [exp]	12.5	0.9006
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10003801 [exp]	13.4	0.8500
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10002172 [exp]	13.7	0.8798

Compare expression of checked genes

Lus10009580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.