Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020401 [exp] 97 / 2e-27 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009581 pacid=23145724 polypeptide=Lus10009581 locus=Lus10009581.g ID=Lus10009581.BGIv1.0 annot-version=v1.0 ATGGCAACTTCCCAGGGTGAAGCAGAGAAGTCTATACAAGAGCTTTCAGGATCTAATCCAGTTACAACTCATGAAGAACTAATCCATACTGAAGGGGAAG GACAAGATGATCAAGTAAATGAGAAGAGTCCAGTTGATGAGCCGGGAGAGGAGGAGGATGAAGATGAGGAGTTGTGGCCGGCGGCAGAACACCATCAGTC CCCTGATGCCGAGGAAGACACCAAGGAGGCCGCGGCAGTGACTGCTTTCGATGATGATGACGATGAGAAAGATGATGAAGAGGACATTGTTTGA
AA sequence Show only first row Show all	>Lus10009581 pacid=23145724 polypeptide=Lus10009581 locus=Lus10009581.g ID=Lus10009581.BGIv1.0 annot-version=v1.0 MATSQGEAEKSIQELSGSNPVTTHEELIHTEGEGQDDQVNEKSPVDEPGEEEDEDEELWPAAEHHQSPDAEEDTKEAAAVTAFDDDDDEKDDEEDIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009581 [exp]	0	1
					Lus10020401 [exp]	1.0	0.9452
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10042005 [exp]	3.9	0.9070
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10036497 [exp]	6.5	0.9128
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	6.6	0.9197
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	13.0	0.8991
AT5G46530			AWPM-19-like family protein (....		Lus10004587 [exp]	13.3	0.9082
					Lus10042826 [exp]	14.3	0.8847
					Lus10041944 [exp]	14.4	0.8947
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10022141 [exp]	18.3	0.8894
AT4G18340			Glycosyl hydrolase superfamily...		Lus10042825 [exp]	18.8	0.8981

Compare expression of checked genes

Lus10009581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.