Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16030 488 / 2e-161 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT1G67520 374 / 2e-120 lectin protein kinase family protein (.1) AT4G21390 374 / 1e-117 B120 S-locus lectin protein kinase family protein (.1) AT4G21380 374 / 2e-117 ARK3 receptor kinase 3 (.1) AT1G61610 370 / 5e-116 S-locus lectin protein kinase family protein (.1) AT4G27290 367 / 8e-116 S-locus lectin protein kinase family protein (.1) AT4G11900 366 / 1e-114 S-locus lectin protein kinase family protein (.1) AT1G11330 362 / 6e-113 S-locus lectin protein kinase family protein (.1.2) AT1G11340 362 / 2e-112 S-locus lectin protein kinase family protein (.1) AT1G61380 350 / 4e-109 SD1-29 S-domain-1 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003156 [exp] 795 / 0 AT3G16030 556 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10025784 [exp] 416 / 3e-132 AT3G16030 596 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10023391 [exp] 420 / 2e-131 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10037732 [exp] 400 / 9e-128 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 396 / 6e-126 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 407 / 2e-124 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10033743 [exp] 392 / 2e-124 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10018516 [exp] 406 / 3e-124 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10007600 [exp] 406 / 2e-123 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442200 [exp] 463 / 3e-152 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G441400 [exp] 461 / 2e-151 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.005G014700 [exp] 425 / 6e-137 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G134900 [exp] 412 / 3e-132 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 405 / 5e-130 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 405 / 7e-130 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 405 / 1e-129 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 405 / 1e-129 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 405 / 2e-129 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039200 [exp] 403 / 6e-129 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10009582 pacid=23145732 polypeptide=Lus10009582 locus=Lus10009582.g ID=Lus10009582.BGIv1.0 annot-version=v1.0 ATGGCAGTGGTAGTAATACTAAATCAAACCCTTGTAGTGTGCTTCGGCATTCAGCTGCTGTTATTAGCAGCGTCATGTCATCAGCAATCCACGCTGTTTC AAGGCAAGCAAATCGTTGCAGTAAACCGTCTACTGGCGTCAGAAAACGGAATGTTCGTTCTTCAGGTTGGCTCTATCGTTGGCGACAACCCGAAGAACCC TATAAGAAACAATTACCTTGGAATATGGTACAATACTAACGACGTCGACAATGCCATGCACCGGCCTGTCTGGATCGCAAACCGGAACACCCCGCTTTCG GGGCACCCACGGTGGCTGACTATTGACAACAAAGACGGTAGTTTCAAGATTCTGCAGGGCGGCGAAGAAGCCATCATACTTTGGCAGAGCTTTGATCACC CAACAGACACACTTCTGCCTGGAATGAAGCTTGGGATGGCTCACATGAGTGGCCACATATGGTCTCTAACTTCATTTAGGAGTGAATATTCAGCTGCTGT CGGTTCATTTACTTTTGGGATTGACCCAAATGATACAACCCAGCTGATGATCTGGCAAAGAGGAGAACCGATTTGGAAGGTTTCGATTCGAAACGCAGTG CACGGGTTTTACATTTCCCGAATTGATTATAGGTACAATTTCAGCTATATCTCCAATCAAAACGGGACATACATCCACTACACAATGAATAGGCCAGACA TACTTTTTTCGAGTTTACGAATAGAGCCTGATGGTCAGCTTGTGGGCTACGGTGAGGGTGGTGACATGCTTAGAGCGGATAACTCTCGAACCCCATCAAC TACTACGCCAAGAGCGGGTATCCTTGATGGCATTGCGTGTGGACAGCTACTACACTACGGTGAGGGTGGTTCCAATGAGGAAGGCTGTATGCCTTGGAAG CTGCCTGAGTGTAGAATCTCGTCTCACGGAAGACTCCTCGGCAAGGATTATCCATTCGAGTTCACGCCTAATTTGGGTATCATGGCAAGCCAAGGTTTCA AGTATAGTGAAACTGAGAATCTGACACTTGTGGAGTGCATGCAGAATTGCTTGAAGAAGTGCTCTTGTGCTGCATATGCTTCTACCAATGAAGATGACAC AGGGTGTGAGACTTGGGACTCTGCTTTCGGCTTCGAACCTCTTTCAGCGAATTCTTCGCATCATGGGAGATTGATGTACTTCATTGATCAAGTAAACAAA TGGTGGGAGGCAGTTACAATTATGGTAGGATTAGTCGTTATCATCTTGCTGGTTCTTATCTTCTCCTGCATTTTCTCAACCATATTTAAAAATAAAGGTG AAATAAAGATCAATTTGAAGACCCTGTTTGGCTTAATAGAAGGAAATGTCTTGTCCAAGACATCAAATCATACATTGGAAAAGCAAGAAGACGGTGAGAA TGAGTTGCAAACATTCTACTTTGAAACCATCCTTGTTGTCACAAATTACTTTTCCGAATCAAATAAGATCGGAGAAGGTGGTTTTGGACCTGTTTATAAG GGAGAACTCATAAATGGACAGAAAATTGCAATAAAGAGATTATCGAAAAGTTCACGGCAAGGGTTTGTGGAGTTCAAAAATGAAGCTCTCCTTATTGCTA AACTACAACACAGTAACCTTGTGAGGCTATTGGGGATATGCGTATCCGGAGCAGAAATGATTTTAGTTTATGAGTATATGCCAAATAAAAGCTTAGATTT CATTCTTTTCGACGCGAGAAGAAAGAATTTGTTAGATTGGAAGAGAAGATTTCACATCGTTAAGGGAATCACACAAGGACTGCTTTACCTCCATAAGTAT TCCAGATTAAGAGTAATTCACCGTGACTTAAAGGCAAGTAATGTACTGCTTGATGATGAGATGAATCCAAAAATATCAAATTTTGGAATGGCCAGAAGGA TATTCGGCATCAAGAAATTGGAAACAAACACTAAACGTGTTGTTGGAACGTACGGCTATATGGCTCCGGAGTATGCATCTTATGGTATTGTTTCAGTGAA AATCGACATATTTAGCTTCGGCGTCTTGTTATTGGAAATTGTGAGTGGGAGAAAGAACAATTCCTTCTATAAGCCTGATGAACAACCAGTTACGCTCATT GGATATGCATGGAAATTGTGGAATGAAGGTCATGGACTCCAACTCGTTGACCAAACATTGGGAGACGTTAACACTACAAATGTGATGAGATGCATTCGCT ATGTGTTCAAGACCAAGCCACAGATAGGCCAACTATGTGTGAAATTGTGA
AA sequence Show only first row Show all	>Lus10009582 pacid=23145732 polypeptide=Lus10009582 locus=Lus10009582.g ID=Lus10009582.BGIv1.0 annot-version=v1.0 MAVVVILNQTLVVCFGIQLLLLAASCHQQSTLFQGKQIVAVNRLLASENGMFVLQVGSIVGDNPKNPIRNNYLGIWYNTNDVDNAMHRPVWIANRNTPLS GHPRWLTIDNKDGSFKILQGGEEAIILWQSFDHPTDTLLPGMKLGMAHMSGHIWSLTSFRSEYSAAVGSFTFGIDPNDTTQLMIWQRGEPIWKVSIRNAV HGFYISRIDYRYNFSYISNQNGTYIHYTMNRPDILFSSLRIEPDGQLVGYGEGGDMLRADNSRTPSTTTPRAGILDGIACGQLLHYGEGGSNEEGCMPWK LPECRISSHGRLLGKDYPFEFTPNLGIMASQGFKYSETENLTLVECMQNCLKKCSCAAYASTNEDDTGCETWDSAFGFEPLSANSSHHGRLMYFIDQVNK WWEAVTIMVGLVVIILLVLIFSCIFSTIFKNKGEIKINLKTLFGLIEGNVLSKTSNHTLEKQEDGENELQTFYFETILVVTNYFSESNKIGEGGFGPVYK GELINGQKIAIKRLSKSSRQGFVEFKNEALLIAKLQHSNLVRLLGICVSGAEMILVYEYMPNKSLDFILFDARRKNLLDWKRRFHIVKGITQGLLYLHKY SRLRVIHRDLKASNVLLDDEMNPKISNFGMARRIFGIKKLETNTKRVVGTYGYMAPEYASYGIVSVKIDIFSFGVLLLEIVSGRKNNSFYKPDEQPVTLI GYAWKLWNEGHGLQLVDQTLGDVNTTNVMRCIRYVFKTKPQIGQLCVKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10009582 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	3.3	0.9376
AT2G46495			RING/U-box superfamily protein...		Lus10025546 [exp]	3.5	0.9269
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10038280 [exp]	3.9	0.9209
AT3G47570			Leucine-rich repeat protein ki...		Lus10032306 [exp]	4.6	0.9200
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10010831 [exp]	6.0	0.9232
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	6.2	0.9272
AT5G36930			Disease resistance protein (TI...		Lus10007814 [exp]	9.8	0.9197
AT3G25290			Auxin-responsive family protei...		Lus10000915 [exp]	11.8	0.9168
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	12.0	0.9107
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	14.8	0.8982

Compare expression of checked genes

Lus10009582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.