Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48500 91 / 3e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020403 [exp] 245 / 4e-84 AT5G48500 127 / 7e-38 unknown protein Lus10021984 [exp] 60 / 1e-11 AT5G18310 76 / 2e-17 unknown protein Lus10042520 [exp] 60 / 2e-11 AT5G18310 81 / 1e-19 unknown protein Lus10011841 [exp] 40 / 0.0005 AT3G07170 196 / 9e-61 Sterile alpha motif (SAM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G250800 [exp] 120 / 4e-35 AT5G48500 100 / 2e-27 unknown protein Potri.019G029600 [exp] 72 / 3e-16 AT5G18310 94 / 2e-24 unknown protein Potri.013G052600 [exp] 72 / 4e-16 AT5G18310 97 / 8e-26 unknown protein Potri.015G040500 [exp] 45 / 7e-07 AT5G18310 59 / 2e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009584 pacid=23145719 polypeptide=Lus10009584 locus=Lus10009584.g ID=Lus10009584.BGIv1.0 annot-version=v1.0 ATGGAAGAGTACTATAACTACAACTATGGCGTAGGAGGAGGAGGACACGTGCCGGCGTTCGGGAGCTGGGATTGGAACAACGACCTCCCTTTCACTCAGT GCTTCGACTCCGCTCGACAACCAGCCGCCGCCGGTTTCCTCCGCTACAGCTACTCCTCGGAGGACAGGGATCTCTACCTCGCCGGAGATTTGTACCAGAA CGACGTCGTCGCTCCTGCTGTTTTCGTTGTCCCTCGCCGCACTAGGCAGGGGAAAGTGCAGAGCAGAGAAGGCAAAACGACGAAGCAGCAGCAGAAGAGG GAAGTGAGCTACAACGATTGCGTATACGACGTCGTTAAGGACCCGCCGAGTCCGCCTCCGGCGCCGCCACGGCGGCGAATTCCGAAGCCGGTCGATGAGG ACTTGTACAAGATCCCGCCGGAGCTCCTCTGCTCACCCAACAAACCCAAAAAGAAGCGAGCATTTGGGTTCTTCACGAGCTGCTTGCTGCCGACGTGCGT TGTCTGA
AA sequence Show only first row Show all	>Lus10009584 pacid=23145719 polypeptide=Lus10009584 locus=Lus10009584.g ID=Lus10009584.BGIv1.0 annot-version=v1.0 MEEYYNYNYGVGGGGHVPAFGSWDWNNDLPFTQCFDSARQPAAAGFLRYSYSSEDRDLYLAGDLYQNDVVAPAVFVVPRRTRQGKVQSREGKTTKQQQKR EVSYNDCVYDVVKDPPSPPPAPPRRRIPKPVDEDLYKIPPELLCSPNKPKKKRAFGFFTSCLLPTCVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48500			unknown protein		Lus10009584 [exp]	0	1
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	1.7	0.8909
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Lus10013422 [exp]	2.4	0.8476
AT3G27390			unknown protein		Lus10032110 [exp]	3.2	0.8836
AT1G29120			Hydrolase-like protein family ...		Lus10001893 [exp]	4.6	0.8299
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035386 [exp]	4.6	0.8472
AT1G74150			Galactose oxidase/kelch repeat...		Lus10031420 [exp]	6.5	0.8581
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031781 [exp]	6.7	0.8399
AT1G15170			MATE efflux family protein (.1...		Lus10029694 [exp]	13.7	0.8557
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	13.7	0.8448
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10009102 [exp]	17.5	0.8156

Compare expression of checked genes

Lus10009584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.