Plant FIBer expression Database

Lus10009585 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07440 293 / 1e-100 unknown protein
AT5G48530 261 / 4e-89 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020404
[exp]
433 / 2e-156 AT3G07440 305 / 9e-106 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G250500
[exp]
318 / 7e-111 AT3G07440 313 / 6e-109 unknown protein
Potri.007G083100
[exp]
49 / 4e-08 AT3G07440 55 / 7e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10009585 pacid=23145703 polypeptide=Lus10009585 locus=Lus10009585.g ID=Lus10009585.BGIv1.0 annot-version=v1.0
ATGACTTCACTTACGAGACGAATTCAGTGCTTAACCTCATGCCTCCGTTCGGTCGCCGTCGCCGGCATCCGTACGGTGAGAACGGACGCCATGTCACCGA
GCAGGCGGCGGAATAGGGCTCCCGCTTTCCAATCGAAGAAGGCGGAGGAGAAATCGGAGTGGTGGATAGTCGACGGAGAGATGCACGAAATCGGCGAGAA
CGTGCCTCCACGGGAAAGGTTCGTGATTCCTAGGGATAACATCCCGAACAAGCGGCGGAAGCAGCTCAGGGAGCAGTTCATGCGGCGGACTCGCCTCGTT
CTCAAGGATTCGGAGCACGAGCCGTGGTGTAGAAGGTACATGGAGCTGTATCAGGAACTGAGAGAGAACTGGGAGAGGCTGTACTGGGATGAAGGTTTCT
CGAAGAAGATTGCTCGAGATCATGCCAATTACGAATCGGCCGAGGATGATGATCAGGACTTCAATCCATACAGGAGCAGGACTGATTCAATGAAGGAAGG
CACTTCTGATAGAACCAGACAAGGTGAATCATGGGAAAATGGCAACCAAGTTCGGGATAAATTCGAGTACGATCGAGACAGAAGAATGAGGGAGAAAGCT
CTCGGTTACCAGTTGCTGATTGCTGGTTTCTTGTTCGAGGCAGCATTTGCGCCGATGAATGGAGTGCGATTCCCAGACATGCCTCATTCTAGCTTGCGGA
ATCGGCCATTGCACTTTGTCGAAGAAACCAGATGA
AA sequence
>Lus10009585 pacid=23145703 polypeptide=Lus10009585 locus=Lus10009585.g ID=Lus10009585.BGIv1.0 annot-version=v1.0
MTSLTRRIQCLTSCLRSVAVAGIRTVRTDAMSPSRRRNRAPAFQSKKAEEKSEWWIVDGEMHEIGENVPPRERFVIPRDNIPNKRRKQLREQFMRRTRLV
LKDSEHEPWCRRYMELYQELRENWERLYWDEGFSKKIARDHANYESAEDDDQDFNPYRSRTDSMKEGTSDRTRQGESWENGNQVRDKFEYDRDRRMREKA
LGYQLLIAGFLFEAAFAPMNGVRFPDMPHSSLRNRPLHFVEETR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07440 unknown protein Lus10009585
[exp]
0 1
AT5G07950 unknown protein Lus10021622
[exp]
3.7 0.8908
AT3G51100 unknown protein Lus10041813
[exp]
4.9 0.8841
AT5G57230 Thioredoxin superfamily protei... Lus10003582
[exp]
22.4 0.8611
AT5G19350 RNA-binding (RRM/RBD/RNP motif... Lus10027373
[exp]
23.3 0.8705
AT5G14930 GENE101, SAG101 senescence-associated gene 101... Lus10011697
[exp]
28.9 0.8378
AT2G26430 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3... Lus10036509
[exp]
29.1 0.8693
AT3G54720 MFO1, HPT, COP2... PRIMORDIA TIMING, Multifolia, ... Lus10017223
[exp]
30.6 0.8265
AT3G25940 TFIIB zinc-binding protein (.1... Lus10015458
[exp]
31.1 0.8553
Lus10012330
[exp]
32.9 0.8237
AT1G60200 splicing factor PWI domain-con... Lus10030866
[exp]
38.4 0.8216

Lus10009585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.