Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27990 175 / 4e-55 ATYLMG1-2 YGGT family protein (.1) AT3G07430 172 / 1e-53 ATYLMG1-1, EMB1990 embryo defective 1990, YGGT family protein (.1) AT5G21920 68 / 1e-13 ATYLMG2 YGGT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020405 [exp] 333 / 2e-117 AT4G27990 199 / 1e-64 YGGT family protein (.1) Lus10008993 [exp] 68 / 1e-13 AT5G21920 186 / 1e-58 YGGT family protein (.1.2) Lus10009622 [exp] 68 / 1e-13 AT5G21920 181 / 7e-57 YGGT family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G250200 [exp] 182 / 2e-57 AT4G27990 210 / 2e-68 YGGT family protein (.1) Potri.006G220400 [exp] 76 / 2e-16 AT5G21920 222 / 1e-72 YGGT family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02325 [flax] [poplar] YGGT YGGT family
Representative CDS sequence Show only first row Show all	>Lus10009586 pacid=23145761 polypeptide=Lus10009586 locus=Lus10009586.g ID=Lus10009586.BGIv1.0 annot-version=v1.0 ATGGCGCTGACGATCGCTTCCCCAGTCGGCGTCGTCCTCCAAGCTCCTCCTCTCATCCATAGACAAATTCACCGGCGATTCGCCACCGCCGTATCTCTTC CACTCCTCCGGAAACAGTCATTCTCGCTTCGAATCTCCACTCCGCAGCCAAGGTTTAGGGTTTCGGCTGCGGTATCCCCGACTACTCAATCTCCACTTGT CGAGCCGCTGACATCGCTCACCGGAGCGACGAGGACGGTGACGACCATTGTAACTCTAGCCTTCTCTGTGGCGCGACTGTTCGCGAGTTCCCTCTTGAAG CAGGTCGGTCTGCTGTCGTCGCCGGTGGCCGCGATCGGTGCAGGCGCCGGCCCGCTATTCTTTGCGGCGATGGATAGCCGTCCTAGTCCGTACCTGAACA CTCCGTTGACGGTGGTTGCAGCGGGATTGGCGAAGTGGCTGGACATCTACAGTGGCGTCCTGATGGTTAGGGTTTTGCTCAGTTGGTTCCCGAACATTCC CTGGGATCGGCAGCCATTGTCGGCTATTAGGGACCTCTGTGATCCTTATCTGAGCTTGTTTAGGAATATAATTCCTCCGGTTTTCAACACTCTGGATGTG AGTCCTCTGCTGGCTTTTGCTATTCTGGGGTTGCTTGGTTCAATTCTCAAAAGCAGTTGA
AA sequence Show only first row Show all	>Lus10009586 pacid=23145761 polypeptide=Lus10009586 locus=Lus10009586.g ID=Lus10009586.BGIv1.0 annot-version=v1.0 MALTIASPVGVVLQAPPLIHRQIHRRFATAVSLPLLRKQSFSLRISTPQPRFRVSAAVSPTTQSPLVEPLTSLTGATRTVTTIVTLAFSVARLFASSLLK QVGLLSSPVAAIGAGAGPLFFAAMDSRPSPYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLSLFRNIIPPVFNTLDV SPLLAFAILGLLGSILKSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	0	1
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10035773 [exp]	1.4	0.9531
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10020405 [exp]	2.4	0.9324
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	3.0	0.8988
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10035751 [exp]	3.7	0.9033
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	4.2	0.9156
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10037330 [exp]	4.4	0.8789
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	4.9	0.8916
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042592 [exp]	5.0	0.8655
AT2G29180			unknown protein		Lus10016512 [exp]	6.0	0.9134
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	6.7	0.9111

Compare expression of checked genes

Lus10009586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.