Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25400 146 / 5e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020407 [exp] 195 / 3e-65 AT3G25400 178 / 1e-58 unknown protein Lus10003475 [exp] 132 / 1e-40 AT3G25400 164 / 3e-53 unknown protein Lus10015730 [exp] 121 / 3e-36 AT3G25400 157 / 1e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G250000 [exp] 166 / 5e-54 AT3G25400 151 / 3e-48 unknown protein Potri.014G148200 [exp] 159 / 9e-51 AT3G25400 175 / 2e-57 unknown protein Potri.002G235000 [exp] 157 / 5e-50 AT3G25400 134 / 5e-41 unknown protein Potri.010G069700 [exp] 135 / 4e-42 AT3G25400 166 / 4e-54 unknown protein Potri.008G168700 [exp] 135 / 8e-42 AT3G25400 170 / 9e-56 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0231 [flax] [poplar] MazG PF03819 [flax] [poplar] MazG MazG nucleotide pyrophosphohydrolase domain
Representative CDS sequence Show only first row Show all	>Lus10009588 pacid=23145725 polypeptide=Lus10009588 locus=Lus10009588.g ID=Lus10009588.BGIv1.0 annot-version=v1.0 ATGACGGAGGCAGACTCTTCCGACGGCGGCGGCGGAGAAGCGGTGTCCCTCGATCTCCTGAAGCACAAGATGGCGGAATTCGCCAAAGAACGCGACTGGG ATCGCTTCCACAGCCCCAGAAACTTGCTCCTTGCTCTGGTAGGGGAAGTGGGTGAGCTATCAGAGATATTCCAGTGGAAAGGAGAGGTGCCAAAGGGGCT CCCAGGCTGGGAACAAGAAGAGAAAACCCACTTGGGTGAAGAACTCTCAGACGTCTTACTGTATCTCGTAAGGCTCTCTGATATATGTGGGATTGACCTT GGTAAAGCTGCTCTGCGTAAGCTGCACCTCAACGCCATTAAGTACCCTGCTGCTGCTGCAGTTTCCAACACCAGTAATAATAATGGCAGCAACAGCAAAA CTGAAGAAGAAGAGTTGCAGAAAGCAGAATTGAATTGA
AA sequence Show only first row Show all	>Lus10009588 pacid=23145725 polypeptide=Lus10009588 locus=Lus10009588.g ID=Lus10009588.BGIv1.0 annot-version=v1.0 MTEADSSDGGGGEAVSLDLLKHKMAEFAKERDWDRFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPGWEQEEKTHLGEELSDVLLYLVRLSDICGIDL GKAALRKLHLNAIKYPAAAAVSNTSNNNGSNSKTEEEELQKAELN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25400			unknown protein		Lus10009588 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	14.6	0.8811
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	16.9	0.8854
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	21.2	0.8749
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10007778 [exp]	32.9	0.8605
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	35.2	0.8739
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	39.1	0.8661
AT2G03590		ATUPS1	ureide permease 1 (.1)		Lus10036910 [exp]	40.6	0.8594
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	41.2	0.8705
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10028527 [exp]	52.3	0.8585
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	54.2	0.8570

Compare expression of checked genes

Lus10009588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.