Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07400 968 / 0 lipase class 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020409 [exp] 1559 / 0 AT3G07400 1283 / 0.0 lipase class 3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G249400 [exp] 1071 / 0 AT3G07400 1235 / 0.0 lipase class 3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10009590 pacid=23145692 polypeptide=Lus10009590 locus=Lus10009590.g ID=Lus10009590.BGIv1.0 annot-version=v1.0 ATGGTCCTCGCCGAGTGCGTCTACAAGAGACCTGCTGCTGAAATGGTTCGAGCTGTGAACAAGTTTAAGGCAGATTTTGGAGGACAAGTTGTTTCTCTAG AACGTGTCCAACCCTCTTCAGATCACGTCCCTCACAGGTACCTGCTAGCTGAAACAAGCGATACCTTGTTTGCTTCCTTTATTGGTACAAAGCAGTACAA GGATTTGGTAGCTGATGTAAACATCCTGCAAGGTGCCATATTTCAAGATGATGCCTCAACTGTAGCTGCTGATTCTATTATAGGAGAACCTTCAAAAGCT AATGGAGAACGTGACAAAATAACGGTCGAGTCAAAACCCAAATCAGTTAAAGATCAACCAAAGCCTGCTGCCCATAGAGGATTCTTAGCTCGTGCTAAGG GCATACCTGCTCTAGAGTTGTACAAGCTAGCCCAGAAAAAGAATCAGAAGCTTGTTCTATGTGGCCATTCTCTTGGTGGAGCTGTTGCAGCCCTAGCTAC CCTTGCTATTCTGAGAGTTGTTGCTGCGGCATCTTCATCAAAAGAGCATGAAAAAGTTCCGGTTAAATGCATAACATTTTCCCAACCGGCAGTTGGGAAT GCTGCTTTAAGAGATTATGTGCATGGAAACGGTTGGCAGCACCATTTCAAGACTTACTGCATTCCTGAAGATTTAGTGCCTCGTTTCCTCTCTCCTGCTT ACTTTGATCATTATAATGCACAGTCTTCATCGGGGCGTTCTGAGGTTGAGAGGCCTTCTGACGTTGATTCTTCGTGGCTGACTGTTATTAAACCAGAAGA AGGAATAGAAAAATTAAAGGAAAGAGGGCAAAGAGAAAAGAAGGGAGAGCAGCTCGTAATTGGTTTAGGCCCTGTGCAAACTTCCTTTTGGAGACTTTCA AGGCTTGTTCCCATAGAGGGTATTAGAAGGCAATTTATTAAGTTTACTGGAAAGCCAGTTGATCTTTTAGAGACGTCGGAAGCCCCTAGTTCAACTTTGA CCTCTTCAATTGAAGATGCAATAATTGAACCACAGTCTCTTGAAATCCAAGAGAATTCTGATGGCATATCACTTAAACCATTACCTGATGTTAACAATGG GAAACAAGATGAAACTGGGACTGAAAAGTTCTCTGAAAAGGCTGGTCCCAAAGGTGGAGACAGAAGGACCTGGCAGAGGGTACCTTACCTACCTTCATAT GTCCCATTTGGCGAGCTGTATCTGTTGGAAAATTCTTCAGTCGAATTACTATCTGGTGCAGAGTACTCACAATTGACGTCGCTTCAGGCCAGATCCCTCA TTTTGTTTGCTTTGTTCTGGCAAAGACATGTCCAGGTCAAATCTGTTTTTGCTGAACTAAAGGAACGACTTCATTCACATTCAATGAGGGCTTATAGGTC ACGATTTCAAAGAATCTATGACTTGTGCATGGGTGATGATGGCTCATCTTTCCCAGGGATGGAGCAACTTCAGCAGTTTCCACATTTACAACAATGGCTT GGACTTACAGCTGCAGGTACCGTGGAGCTTTCTCAGATTGTGGTTTGGTGTTCAACTACTGTAGAGTCATTCCCGTCAGCACCCAGCTATCCCCCAGCTG AAGGAAAACAGCCAGAACTACAAAAGATAAGGGTCTTGGTTGGAGCTCCGTTGAAAAGGTCACCTATAGTGGCGGACTCTTCGATGCCTCTTTTCTCATC GATTAATCCCGATGTTGGCAACCTCAGCGGTGAGCATAGTTTTAGGCACCAGGATAACGGCCTGCGTCCAGAAGAGTTGCGTGAGTTTTGCATCTTCTGT ACGAGCGACTTCATTACTGTTGCAAAGGAGGTTCATGTCAGAACACGCAGAGTTCGATTACTTGGCCTTGAGGGTGCTGGCAAGACGTCGCTCTTCAAGG CAATAATGGATAAAGGTAGACTGACTGCTATAACGAATTCGGACCACATGTTTACGGAGGCTGATGTTCAAGAAGCTATTGCTGGTGGCATATGCTACTG TGATTCATCTAGTGTGAATTTGCAGGATCTGAATACAGAGGTCTCACGATTCAGGGATGAACTATGGACAGGAATTCGCGACCTCAGCAGGACAATAGAC TTGATAGTTCTTGTACACAACTTATCCCACAAGATTCCCAGGTATAACAACCCAAACACAACGCAGCAGCCAGTCCTCGCATTTTTATTAGACGAGGCCA AGGCTTTGGGGATCCCGTGGGTCCTCGCAATAACGAACAAATTCTCGGTCAGCGCGCACCAACAGAAGGCGGCAATCGAGGCCGTCCTGCAGGCCTATCA AGCCTCTCCCAGCACGACAGAAGTGGTCAATTCGTGTCCTTACGTGCTCTCCGGTGCCGGCGGAAACTCTACTCTCCCCTGGGCCGCAATCGGTGGAGAC TCCGGAGGGAACTCGTCCGCTAAGAGGCCGTTCTTCTCTCCGCTTGATCTCGCTCGTAGGCCGTTTCAGAGACGAGACACGATTATCCCTGTTGATGGCG TGAACTCGGTCTGCCAGCTTGTCCATCGTGTGCTTCGAAGCACCGAAGAGGCGGCTCTTGAGGAGCTGGCTCGAGACAGGCTTCTGGCGGAGCTGGTACG AGAGCAACATGCATTGGGCGGGAATCGAGAATCGCAGTCAAAGGAGTCCTCCATGACAGCTGCCGCGGTGGGTGCCTCCGTCGGAGCCGGTCTTGGCTTG GTGTTGGCTGTAGTTATGGGGGCAGCATCTGCTCTCCGGAAGCCTTAG
AA sequence Show only first row Show all	>Lus10009590 pacid=23145692 polypeptide=Lus10009590 locus=Lus10009590.g ID=Lus10009590.BGIv1.0 annot-version=v1.0 MVLAECVYKRPAAEMVRAVNKFKADFGGQVVSLERVQPSSDHVPHRYLLAETSDTLFASFIGTKQYKDLVADVNILQGAIFQDDASTVAADSIIGEPSKA NGERDKITVESKPKSVKDQPKPAAHRGFLARAKGIPALELYKLAQKKNQKLVLCGHSLGGAVAALATLAILRVVAAASSSKEHEKVPVKCITFSQPAVGN AALRDYVHGNGWQHHFKTYCIPEDLVPRFLSPAYFDHYNAQSSSGRSEVERPSDVDSSWLTVIKPEEGIEKLKERGQREKKGEQLVIGLGPVQTSFWRLS RLVPIEGIRRQFIKFTGKPVDLLETSEAPSSTLTSSIEDAIIEPQSLEIQENSDGISLKPLPDVNNGKQDETGTEKFSEKAGPKGGDRRTWQRVPYLPSY VPFGELYLLENSSVELLSGAEYSQLTSLQARSLILFALFWQRHVQVKSVFAELKERLHSHSMRAYRSRFQRIYDLCMGDDGSSFPGMEQLQQFPHLQQWL GLTAAGTVELSQIVVWCSTTVESFPSAPSYPPAEGKQPELQKIRVLVGAPLKRSPIVADSSMPLFSSINPDVGNLSGEHSFRHQDNGLRPEELREFCIFC TSDFITVAKEVHVRTRRVRLLGLEGAGKTSLFKAIMDKGRLTAITNSDHMFTEADVQEAIAGGICYCDSSSVNLQDLNTEVSRFRDELWTGIRDLSRTID LIVLVHNLSHKIPRYNNPNTTQQPVLAFLLDEAKALGIPWVLAITNKFSVSAHQQKAAIEAVLQAYQASPSTTEVVNSCPYVLSGAGGNSTLPWAAIGGD SGGNSSAKRPFFSPLDLARRPFQRRDTIIPVDGVNSVCQLVHRVLRSTEEAALEELARDRLLAELVREQHALGGNRESQSKESSMTAAAVGASVGAGLGL VLAVVMGAASALRKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07400			lipase class 3 family protein ...		Lus10009590 [exp]	0	1
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Lus10017641 [exp]	1.4	0.8881
AT3G07400			lipase class 3 family protein ...		Lus10020409 [exp]	1.7	0.8629
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10011863 [exp]	2.4	0.8851
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	7.3	0.8237
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	7.9	0.8284
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	9.2	0.8575
AT5G51150			Mitochondrial import inner mem...		Lus10043005 [exp]	9.9	0.7905
AT1G60460			unknown protein		Lus10041115 [exp]	10.1	0.7751
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10008651 [exp]	13.1	0.7566
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10007014 [exp]	13.8	0.8471

Compare expression of checked genes

Lus10009590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.