Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25250 371 / 5e-126 AtOXI1, OXI1, AGC2-1 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G13000 361 / 1e-122 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G36350 207 / 6e-59 Protein kinase superfamily protein (.1) AT5G03640 198 / 1e-55 Protein kinase superfamily protein (.1) AT5G58140 186 / 3e-51 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT1G53700 177 / 2e-50 PK3AT, WAG1 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) AT3G14370 171 / 6e-48 WAG2 Protein kinase superfamily protein (.1) AT1G51170 159 / 2e-44 Protein kinase superfamily protein (.1) AT3G20830 157 / 2e-43 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G34650 154 / 7e-42 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038221 [exp] 460 / 2e-160 AT3G25250 434 / 1e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10020411 [exp] 462 / 4e-160 AT3G25250 318 / 3e-104 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10025882 [exp] 456 / 7e-159 AT3G25250 434 / 2e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10006272 [exp] 179 / 2e-51 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1) Lus10036150 [exp] 169 / 7e-48 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) Lus10001604 [exp] 171 / 3e-46 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10026572 [exp] 171 / 3e-46 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10031259 [exp] 143 / 6e-40 AT3G20830 257 / 2e-84 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10001355 [exp] 147 / 4e-38 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248900 [exp] 368 / 1e-124 AT3G25250 419 / 7e-145 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G114900 [exp] 205 / 5e-58 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.006G003800 [exp] 183 / 1e-51 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.004G209700 [exp] 177 / 2e-48 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G435900 [exp] 166 / 3e-46 AT1G53700 475 / 4e-165 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Potri.011G139800 [exp] 160 / 7e-44 AT1G53700 514 / 3e-180 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Potri.003G205800 [exp] 155 / 1e-42 AT3G20830 475 / 5e-167 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.001G018300 [exp] 155 / 2e-42 AT3G20830 469 / 8e-165 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.009G170550 [exp] 149 / 3e-42 AT5G58140 400 / 1e-134 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G146700 [exp] 125 / 7e-31 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009592 pacid=23145696 polypeptide=Lus10009592 locus=Lus10009592.g ID=Lus10009592.BGIv1.0 annot-version=v1.0 ATGAAGCGGCGGTTCTCAAGGAACGACGGCGGCTGCAGCGGCACCGTCGTCCCGATCCTCGACCTCGACGAGCTCAGAGTCGTCTCCCCCGTCGGCCGCG GCGCTAAAGGCGTCGTGTTCCTCGTCAGAAACCACCACTTCAACGAGTCATGGGCGCTCAAGGTCGTCCTCCGCGATTTCGTCGAGAGAAAACAGAGCTC CCCCGTCGCCGACCACGACAACTCCACCGATCATCATTACAAGAGGATCTGGTTCGAACAGCGGGTTCTGAGCCGGTTCAAGCACCCGCTCCTGCCCCGA CTCCGTGGCATTCTCTCAACCGATAAGATCGTCGCTTACGCCATCGATTACTGCCCCGGCAAGGATCTTAACCGCCTCCGGAAGTTACAGAGCGAGCAAA CCTTCTCTCCGATCATCATCAGATTCTACGCGGCGGAATTGGTTCTGGCGTTGGAGTATTTACACAGTTTAGGGATCGCTTACCGAGATTTGAAGCCGGA GAACATTCTGATTCAAGAGAACGGCCACATAATGCTCGTCGATTTCGACCTCTCGACCGAACTTTCACCTCCTTCTCCGACGTCGGAGAAGAACAAGACG ATGAAGAAGACGAAGAACAATCCGCTACCTAGGTCGAGATCCATGCGGCGGAAGCGCTCGTTAAGCTTACAGTTCCTCTGCGGCGGCGGCTGCTCGACGG ACGAATCCGATCGCGGTCCCGTTCCTATTCTGGAGCGTTCGAAATCGATGATGACGACGACGACAGCAGCGACGGAGGGGAAATCGAACTCGTTCGTCGG AACGGAAGAATACGTGGCACCGGAGGTGATCCAGGGGTACGGCCACGGCTTCTCCGTCGACTGGTGGTCGCTAGGGGTGGTGATGTACGAGATGCTGTAC GGAAGGACACCATTCCGAGGAGCGAATCGGAAGGAGACGTTCTTCAGGATCCTGACGATGTCGCCGAATCTCGGCGGGGAATGCACGCCGTTGCGGGATC TGATCAGGATGCTTCTGGCGAAGGATCCGAAGAGGAGGATAACGGTGGAGGAGATCAAGAGTCATGCGTTCTTCCAGGGATTGAATTGGGATTCGGTGGT TGAAGTTTCACGGCCGCCGTATATTCCGGCGAAGGATGATGGAGGGAGCGTGAATAAGAGCATCGACGTGGAGGCATTCGTAGAGAGAGTCTTTAGCGGA GGCGGCGGCGGCGATACAGTAGCTAACGGCGGAGGTGAGGAAGAGGTGGCGGGAAATCAGGGAGATGAGAAACAAACGGCTCACTCTAACCAGAATTTTG TGCTTTTCTGA
AA sequence Show only first row Show all	>Lus10009592 pacid=23145696 polypeptide=Lus10009592 locus=Lus10009592.g ID=Lus10009592.BGIv1.0 annot-version=v1.0 MKRRFSRNDGGCSGTVVPILDLDELRVVSPVGRGAKGVVFLVRNHHFNESWALKVVLRDFVERKQSSPVADHDNSTDHHYKRIWFEQRVLSRFKHPLLPR LRGILSTDKIVAYAIDYCPGKDLNRLRKLQSEQTFSPIIIRFYAAELVLALEYLHSLGIAYRDLKPENILIQENGHIMLVDFDLSTELSPPSPTSEKNKT MKKTKNNPLPRSRSMRRKRSLSLQFLCGGGCSTDESDRGPVPILERSKSMMTTTTAATEGKSNSFVGTEEYVAPEVIQGYGHGFSVDWWSLGVVMYEMLY GRTPFRGANRKETFFRILTMSPNLGGECTPLRDLIRMLLAKDPKRRITVEEIKSHAFFQGLNWDSVVEVSRPPYIPAKDDGGSVNKSIDVEAFVERVFSG GGGGDTVANGGGEEEVAGNQGDEKQTAHSNQNFVLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10009592 [exp]	0	1
AT1G52190			Major facilitator superfamily ...		Lus10038616 [exp]	3.2	0.9166
AT1G71040		LPR2	Low Phosphate Root2, Cupredoxi...		Lus10032443 [exp]	3.7	0.9000
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10012284 [exp]	3.9	0.8923
AT5G10770			Eukaryotic aspartyl protease f...		Lus10026244 [exp]	4.2	0.8848
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021574 [exp]	6.6	0.8878
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	8.0	0.8837
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10022375 [exp]	9.9	0.8828
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10038093 [exp]	10.6	0.8761
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	11.4	0.8790
AT1G02630			Nucleoside transporter family ...		Lus10030104 [exp]	14.7	0.8765

Compare expression of checked genes

Lus10009592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.