Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07370 331 / 1e-114 ATCHIP, CHIP carboxyl terminus of HSC70-interacting protein (.1) AT2G45920 64 / 1e-11 U-box domain-containing protein (.1) AT3G11840 56 / 2e-08 PUB24 plant U-box 24 (.1) AT3G61390 55 / 2e-08 RING/U-box superfamily protein (.1.2) AT1G01670 54 / 3e-08 RING/U-box superfamily protein (.1) AT1G01660 54 / 4e-08 RING/U-box superfamily protein (.1) AT3G52450 53 / 9e-08 PUB22 plant U-box 22 (.1) AT1G01680 52 / 1e-07 ATPUB54 plant U-box 54 (.1) AT1G71020 52 / 2e-07 ARM repeat superfamily protein (.1.2) AT5G37490 51 / 3e-07 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020412 [exp] 532 / 0 AT3G07370 358 / 2e-125 carboxyl terminus of HSC70-interacting protein (.1) Lus10025884 [exp] 412 / 2e-146 AT3G07370 375 / 5e-132 carboxyl terminus of HSC70-interacting protein (.1) Lus10038219 [exp] 405 / 5e-144 AT3G07370 372 / 6e-131 carboxyl terminus of HSC70-interacting protein (.1) Lus10034113 [exp] 62 / 2e-10 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10043471 [exp] 60 / 6e-10 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10001079 [exp] 54 / 5e-08 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10013001 [exp] 54 / 6e-08 AT1G60190 562 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10040124 [exp] 52 / 6e-08 AT1G66160 154 / 6e-45 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10019308 [exp] 54 / 1e-07 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248700 [exp] 368 / 4e-129 AT3G07370 387 / 7e-137 carboxyl terminus of HSC70-interacting protein (.1) Potri.017G135000 [exp] 58 / 2e-09 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.011G071400 [exp] 57 / 7e-09 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.004G083900 [exp] 56 / 7e-09 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.001G216300 [exp] 56 / 1e-08 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.007G051000 [exp] 56 / 1e-08 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.004G028800 [exp] 53 / 9e-08 AT4G21350 379 / 8e-131 plant U-box 8 (.1) Potri.014G101100 [exp] 53 / 1e-07 AT2G35930 266 / 3e-85 plant U-box 23 (.1) Potri.006G202600 [exp] 52 / 1e-07 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.008G128600 [exp] 52 / 2e-07 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10009593 pacid=23145755 polypeptide=Lus10009593 locus=Lus10009593.g ID=Lus10009593.BGIv1.0 annot-version=v1.0 ATGGGGCAAGGATTGATACTGACGCCGGCGAAGCAAGCCGAGAAGTTGAAGGAAGACGGGAACATGTACTTCAAGAAGGATCGATTAGCAGCAGCAATCG ACGCTTACACTGAGGCGATTGCGTTGTGCCCTCATGTGCCTGTGTACTGGACAAATCGCGCTGTTTGTCACCGGAAGCGCAACAACTGGAAGAAGGTTGA AGAGGATTGTCGTTCTGCTATCAAGCTTGATCACAGTTCTTTCAAGGCTCACCATATGCTGGGACTTGCATTGCTAAAGAGGGAAGAGTATTCGGAGGGA ATCAAGACATTGGAAAGGGCACTAGATCTTGGCAGGGGCCCAAATCAATCAAGCATATTGGTGGAGGAGATCTGGCAAGAGCTTGCGAAAGCAAAGTACT TGGTATGGGAGCAAGCATCTACACAACGTTCCTGGGAGATGCAGAATCTCAAACAAGCTTGTGTGAGTGCTCTTAAAGAGAAATACTTCCTCGACAATCC TCAGGGAATTATGATCTCTGTCTCAGAAGAGGCTAATGATCTGCAGTTGAAGGAGCTGGAGGAAGTGTTTTACAAGGCAGCAGAAGACGACATGCCTACA GATGTACCGGATTACCTTTGCTGCAGAATCTCCCTTGATATCTTCCGCGACCCAGTCATCACACCGATGGGTGTGACTTACGAACGAGGAGTGATTCTTG AACATCTCCAGAAGGTGGGAAAGTTTGACCCGATCACACGGGAGCCACTCGAGCAGTATCAGTTGATCCCCAACCTGGCGATAAAGGAAGCGGTCCAGTC ATACCTGCAGAAGCATGGATGGGCGTACAGAACAGGTGAAGAGTGA
AA sequence Show only first row Show all	>Lus10009593 pacid=23145755 polypeptide=Lus10009593 locus=Lus10009593.g ID=Lus10009593.BGIv1.0 annot-version=v1.0 MGQGLILTPAKQAEKLKEDGNMYFKKDRLAAAIDAYTEAIALCPHVPVYWTNRAVCHRKRNNWKKVEEDCRSAIKLDHSSFKAHHMLGLALLKREEYSEG IKTLERALDLGRGPNQSSILVEEIWQELAKAKYLVWEQASTQRSWEMQNLKQACVSALKEKYFLDNPQGIMISVSEEANDLQLKELEEVFYKAAEDDMPT DVPDYLCCRISLDIFRDPVITPMGVTYERGVILEHLQKVGKFDPITREPLEQYQLIPNLAIKEAVQSYLQKHGWAYRTGEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10009593 [exp]	0	1
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	10.9	0.8848
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10015680 [exp]	15.6	0.8808
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10010395 [exp]	18.3	0.8356
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	20.8	0.8764
AT5G25770			alpha/beta-Hydrolases superfam...		Lus10011694 [exp]	25.6	0.8172
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10039556 [exp]	30.7	0.8462
AT1G27430			GYF domain-containing protein ...		Lus10035192 [exp]	31.1	0.8573
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	31.4	0.8676
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	31.4	0.8720
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10040914 [exp]	33.0	0.8603

Compare expression of checked genes

Lus10009593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.