Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07360 479 / 3e-167 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT5G18320 304 / 1e-98 ARM repeat superfamily protein (.1) AT3G46510 273 / 1e-84 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 257 / 2e-80 ARM repeat superfamily protein (.1.2) AT3G54850 259 / 2e-79 ATPUB14 plant U-box 14 (.1) AT1G23030 252 / 7e-77 PUB11 ARM repeat superfamily protein (.1) AT2G28830 258 / 1e-76 AtPUB12 PLANT U-BOX 12 (.1) AT5G18330 233 / 2e-71 ARM repeat superfamily protein (.1) AT5G18340 217 / 3e-65 ARM repeat superfamily protein (.1) AT5G42340 199 / 6e-57 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020413 [exp] 844 / 0 AT3G07360 478 / 8e-167 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10025885 [exp] 557 / 0 AT3G07360 499 / 2e-175 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10038218 [exp] 552 / 0 AT3G07360 489 / 2e-171 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10043471 [exp] 277 / 3e-86 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10016565 [exp] 268 / 3e-82 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10034113 [exp] 276 / 1e-81 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10040834 [exp] 265 / 3e-81 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 263 / 7e-81 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10012260 [exp] 214 / 2e-62 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248600 [exp] 530 / 0 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.019G029500 [exp] 499 / 2e-175 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052500 [exp] 436 / 1e-150 AT3G07360 415 / 3e-142 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052200 [exp] 415 / 4e-141 AT3G07360 408 / 1e-138 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.008G035700 [exp] 275 / 1e-85 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.001G238500 [exp] 276 / 2e-85 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G113900 [exp] 274 / 3e-85 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 275 / 5e-85 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G128600 [exp] 266 / 4e-82 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.010G226500 [exp] 258 / 3e-79 AT3G54850 806 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10009594 pacid=23145756 polypeptide=Lus10009594 locus=Lus10009594.g ID=Lus10009594.BGIv1.0 annot-version=v1.0 ATGGCGAAGACTGGAGTGCTGGATTCCGACCCGACCCAGATGGCGGCCAGAGCCGACGAGCTGAAGAAGGAGCTCCAGAAGCTAGTCAGCAGCATTGTTG AATCCGGCGGCGACGATTACTCTCTACACACCATCGATCAGGCCGCCGCCGCTCTCAGGGAGCTCCTCAAGCTGAAATCCAGCAAGAAAAAGAAATCGCC TCTTTCCGTCACCGGCGGCGTTTCCCCGGCGAGTAGTTGTCCGGAGAATTTCAAATGCCCTCTTTCCAATGAGCTCATGAGAGATCCCGTGATTCTCTCT ACTGGACAGACTTATGACAGACCATTCATAGTAAATTGGCTGGAATCAGGCAACAGGACTTGCCCGAAAACGAAGCAAGTCCTTTCGCATTCGACACTCA CTCCGAATCACTTGATTAGGGAGATGATCTCGCAATGGTGCAATAGCCACGGATTTGATTTGCCTGATCCGATCCGTTACTCCGACGATGGAGGCGCAAC GACAGAAGCTGATCGCAACAGATTTCATTCCTTGCTTAAGAAGTTAGCCCCCTTGGAGGGGATAGTGGCAGTGGCTGAGCAGAAGGATGCAGCTAAGGAG CTGAGACAGCTGACAAAAAGGATGCCGTCTTTTCGAGCATTATTCTCCGAGTCCGACGGTGCACCGATTCCCCAGCTCCTGTCCATACTCGATCACAATT CCGATCTCGATCCCGATCTCCAAGAAGATGTCATCACAACACTGTTGAACCTCTCGATTCACGACAACAACAAGAAGCTCGTAACCGAGACTCCCATCGC GATCCCTATACTCATTGATGCTTTACGAGCTTCAAAAATCGAGATAAGGACCAATGCTGCAGCTACATTGTTCACATTGTCGGCTCTCGATTCCAACAAG GAGCTTATAGGCAAATCCGGTGCACTGAAGCCGCTGTTCGATCTATTAGAAGAAGGAGATTCCCTGGCGATGAAGGATTCCGCGGCTGCGATTTTCAACC TCTGCATTGTTCAGGAGAACCGGGCGAGGGCAGTGAAGGAAGGCGGTGTTATGGTGATTCTGAAGAAGATTACAGAAGGGGTTCTGGTTAACGAGCTTTT GTCGATACTCGCTACGTTATGTAGCTGTCCTGGGGCGATCATGGATATAGGGGAGCTAGACGGGGTGGCTCGGTTGTTGAGGATCGTGAGGGAGAGTACG AGCGAACGGAGCAAGGAGAATGCGATTGCGATTCTTTACACGGTTTGCTGCTACGATCGGAGCAAGTTGAAGGAAGTGAAGGAGGAAGAGAATGTGTGTG GGAGTATCTCAAAGCTTGCTAATGAAGGAACTTCGAGGGCTAAGAGGAAGGCGAGTAGCATTCTCGAGAGGCTTAACAGGACGGTCACTCGTACACATAC AGCATGA
AA sequence Show only first row Show all	>Lus10009594 pacid=23145756 polypeptide=Lus10009594 locus=Lus10009594.g ID=Lus10009594.BGIv1.0 annot-version=v1.0 MAKTGVLDSDPTQMAARADELKKELQKLVSSIVESGGDDYSLHTIDQAAAALRELLKLKSSKKKKSPLSVTGGVSPASSCPENFKCPLSNELMRDPVILS TGQTYDRPFIVNWLESGNRTCPKTKQVLSHSTLTPNHLIREMISQWCNSHGFDLPDPIRYSDDGGATTEADRNRFHSLLKKLAPLEGIVAVAEQKDAAKE LRQLTKRMPSFRALFSESDGAPIPQLLSILDHNSDLDPDLQEDVITTLLNLSIHDNNKKLVTETPIAIPILIDALRASKIEIRTNAAATLFTLSALDSNK ELIGKSGALKPLFDLLEEGDSLAMKDSAAAIFNLCIVQENRARAVKEGGVMVILKKITEGVLVNELLSILATLCSCPGAIMDIGELDGVARLLRIVREST SERSKENAIAILYTVCCYDRSKLKEVKEEENVCGSISKLANEGTSRAKRKASSILERLNRTVTRTHTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10009594 [exp]	0	1
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10024274 [exp]	3.3	0.8075
					Lus10039441 [exp]	3.7	0.8498
AT5G10310			unknown protein		Lus10025740 [exp]	4.9	0.8260
AT5G18590			Galactose oxidase/kelch repeat...		Lus10043420 [exp]	5.3	0.8036
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10019048 [exp]	6.7	0.8367
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020578 [exp]	13.9	0.8542
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	15.7	0.7819
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	19.4	0.8304
AT3G10540			3-phosphoinositide-dependent p...		Lus10037921 [exp]	20.1	0.8313
AT5G43830			Aluminium induced protein with...		Lus10041181 [exp]	21.4	0.7759

Compare expression of checked genes

Lus10009594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.