Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79500 374 / 1e-131 ATKDSA1, KDSA Aldolase-type TIM barrel family protein (.1.2.3.4.5) AT1G16340 363 / 1e-127 ATKDSA2, ATKSDA Aldolase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001765 [exp] 408 / 9e-138 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10009596 [exp] 353 / 5e-120 AT1G16340 376 / 3e-128 Aldolase superfamily protein (.1.2.3.4) Lus10027741 [exp] 250 / 9e-83 AT1G79500 369 / 4e-129 Aldolase-type TIM barrel family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061900 [exp] 371 / 1e-130 AT1G79500 531 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Potri.005G199100 [exp] 369 / 5e-130 AT1G79500 524 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00793 [flax] [poplar] DAHP_synth_1 DAHP synthetase I family
Representative CDS sequence Show only first row Show all	>Lus10009595 pacid=23140098 polypeptide=Lus10009595 locus=Lus10009595.g ID=Lus10009595.BGIv1.0 annot-version=v1.0 ATGGATCCAACAACACTCTTCAACCAGCTTAAGGTTTGCGTTGCTCGCTTTCCCCATCTTTTCTGCATTCTCTGTGTTTCTTCTTTCCTTCTTATTAAAC ATCTCCTTCTTCTTATTCACTTGCCTCGTGGCCTTTTCCAGTCGGCGGATCCATTTTTCTTGCTTGCCGGCCCCAATGTCATTGAGTCCGAGGAGCACAT TTTCAAGATGGCCAAACACATCAAGGCCATTTCCACCAGAGTTGGGTTGCCTTTGGTCTTCAAGTCAAGTTTTGACAAAGCTAACAGAACTTCCTCCAAG TCATTTCGAGGTCCAGGGTTGATCGAAGGATTGAAGATCCTTGAGAAGGTTAAAGTAGCGTACGACCTGCCCATAGTGACCGACGTGCATGAAAGCATTC AGTGTGAAGAAGTTGGTAAAGTTGCAGACATCATACAGATTCCAGCATTTTTGTGTCGCCAGACAGACTTGCTAGTTGCAGCTGCCAAGACCGGGAAGAT TATAAATATCAAGAAAGGCCAGTTCTGTGCTTCTAGTGTAATGGCGAACTCGGCCGAGAAGGTGAGATTGTCAGGAAATCAAAATGTGATGGTTTGCGAG AGAGGAACTATGTTTGGATATAATGATTTGATTGTTGATCCCCGCAATCTTGAGTGGATGAGAGAGGCTAATTGCCCTGTTGTTGCTGATATAACGCATT CACTACAACAACCTGCTGGCAAAAAGGTGTGCTTTCTCTATTATGTCTCTGCGGTGTTCAATAGTATAAAGGCTAATGAAAGCGTTTTTTAG
AA sequence Show only first row Show all	>Lus10009595 pacid=23140098 polypeptide=Lus10009595 locus=Lus10009595.g ID=Lus10009595.BGIv1.0 annot-version=v1.0 MDPTTLFNQLKVCVARFPHLFCILCVSSFLLIKHLLLLIHLPRGLFQSADPFFLLAGPNVIESEEHIFKMAKHIKAISTRVGLPLVFKSSFDKANRTSSK SFRGPGLIEGLKILEKVKVAYDLPIVTDVHESIQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMANSAEKVRLSGNQNVMVCE RGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGKKVCFLYYVSAVFNSIKANESVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10009595 [exp]	0	1
AT1G16340		ATKDSA2, ATKSDA	Aldolase superfamily protein (...		Lus10009596 [exp]	1.0	0.9332
AT1G71970			unknown protein		Lus10009418 [exp]	3.7	0.8856
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	5.5	0.8967
AT1G67930			Golgi transport complex protei...		Lus10020753 [exp]	5.5	0.8951
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10016448 [exp]	6.9	0.9020
AT4G38050			Xanthine/uracil permease famil...		Lus10035946 [exp]	7.3	0.8375
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	8.0	0.8846
AT4G25240		SKS1	SKU5 similar 1 (.1)		Lus10031722 [exp]	9.4	0.8631
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	9.8	0.8967
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	15.8	0.8758

Compare expression of checked genes

Lus10009595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.