Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79500 373 / 5e-127 ATKDSA1, KDSA Aldolase-type TIM barrel family protein (.1.2.3.4.5) AT1G16340 367 / 9e-125 ATKDSA2, ATKSDA Aldolase superfamily protein (.1.2.3.4) AT1G16330 170 / 1e-45 CYCB3;1 cyclin b3;1 (.1) AT3G11520 104 / 6e-24 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT5G06150 102 / 4e-23 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT1G20610 100 / 1e-22 CYCB2;3 Cyclin B2;3 (.1) AT4G35620 98 / 7e-22 CYCB2;2 Cyclin B2;2 (.1) AT2G17620 95 / 1e-20 CYCB2;1 Cyclin B2;1 (.1) AT4G37490 92 / 1e-19 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1) AT5G11300 92 / 1e-19 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001765 [exp] 405 / 3e-132 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10009595 [exp] 352 / 3e-119 AT1G79500 374 / 9e-132 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10027741 [exp] 322 / 8e-107 AT1G79500 369 / 4e-129 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10041092 [exp] 99 / 7e-24 AT4G35620 169 / 2e-52 Cyclin B2;2 (.1) Lus10026803 [exp] 103 / 1e-23 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10036080 [exp] 103 / 1e-23 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10012261 [exp] 102 / 8e-23 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10016015 [exp] 101 / 8e-23 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10003800 [exp] 86 / 9e-18 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061900 [exp] 371 / 2e-126 AT1G79500 531 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Potri.005G199100 [exp] 369 / 1e-125 AT1G79500 524 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Potri.008G083200 [exp] 192 / 2e-53 AT1G16330 497 / 1e-168 cyclin b3;1 (.1) Potri.010G173200 [exp] 183 / 2e-50 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.002G010000 [exp] 104 / 7e-24 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.016G033000 [exp] 103 / 1e-23 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.005G100000 [exp] 102 / 3e-23 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.006G035200 [exp] 102 / 4e-23 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.005G251400 [exp] 99 / 4e-22 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.009G165800 [exp] 97 / 2e-21 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0036 [flax] [poplar] TIM_barrel PF00793 [flax] [poplar] DAHP_synth_1 DAHP synthetase I family
Representative CDS sequence Show only first row Show all	>Lus10009596 pacid=23140089 polypeptide=Lus10009596 locus=Lus10009596.g ID=Lus10009596.BGIv1.0 annot-version=v1.0 ATGGATCCAACAACACTCTTCAACCAGCTTAAGGTTTGCGTTGCTCGCTTTCCCCATCTTTTCTGCATTCTCTGTGTTTCTTCTTTCCTTCTTATTAAAC ATCTCCTTCTTCTTATTCACTTGCCTCGTGGCCTTTTCCAGTCGGCGGATCCATTTTTCTTGCTTGCCGGCCCCAATGTCATTGAGTCCGAGGAGCACAT TTTCAAGATGGCCAAACACATCAAGGCCATTTCCACCAGGGTGCACTTCATTTTGAGCGTGTTCCAAAAGTTCATGGCTTTGTTGTTATCTGCCCAGTGT GAAGAAGTTGGTAAAGTTGCAGACATCATACAGATTCCAGCATTTTTGTGTCGCCAGACAGACTTGCTAGTTGCAGCTGCCAAGACCGGGAAGATTATAA ATATCAAGAAAGGCCAGTTCTGTGCTTCTAGTGTAATGGCGAACTCGGCCGAGAAGGTGAGATTGTCAGGAAATCAAAATGTGATGGTTTGCGAGAGAGG AACTATGTTTGGATATAATGATTTGATTGTTGATCCCCGCAATCTTGAGTGGATGAGAGAGGCTAATTGCCCTGTTGTTGCTGATATAACGCATTCACTA CAACAACCTGCTGGCAAAAAGTTGGATGGTGGAGGAGTTGCCAGTGGAGGTCTCCGTGAACTAATTCCATGCATAGCAAGAACAGCTGTTGCTGTTGGGG TGGATGGAATTTTTATGGAGGTGCATGATGATCCGTTGAATGCACCGGTGGATGGTCCGACACAGTGGCCACTGCGGAACTTGGAGGAACTGCTAGAGGA GCTCATGGCGATAGCTCCATTACAGAAGACTGCAATTGAGTATTCCCATGGTTATAAGGCTGCGAGACCGAAAGGTGCAGCCCACACTGAGAACCCCTCC TCCATTGCAGCAATCACATCTGCAGGGAACAACACAATTGAGGCAGCTTGTGTTATGGAGAATGTTCCAAAAATGGCTTCCTCTGAACTGTCTAGTAGAG AGACTTTATCTGATGGCGATAAGACAAGTGTGGTTGATTTGGACATTATTTCTAATAGAAAATCTCGTCGTAGAAGATCTTATACTTCACTCTTGATGAC AAGGTCAAAGAGCAATAATAATCCTTTGGGTGCTTACATGTCAGCACAGACTGATATTACCCCTCACATGCGAGGGATATTGATAAACTGGCTAATTGAG GTACACAGCAAATTTCAACTGATGCAAGAAACACTTTATCTGATGGTCACGTTGTTGGACCAATACCTATCTCAAGTCCAGATGAAGAAGAACGAACTGC AACTAGTGGGTCTCACTGCCTTGTTGCTGGCATCAAAGTATGAGGACTTCTGGCATCCAAGGCTTCAACACCTGGCATCCTACCTCATTGAGCTGTGTTT AGTGGAATACGAAGCTTTGAAGTTCAAGCCATCCATGATAAGTGCGTCTGCTATCTTTGTCGCCCGGTGTACTCTGCATATAGCTCCAGCATGGACACCT CTACTTGTAGAACATGCTCGCTATGATGTTTTACAACTCAGGTATTGCGTAGTTCATGTCTTCCCGAGACTTGTCAATATCAGAAGAGGCTCGTTTTAA
AA sequence Show only first row Show all	>Lus10009596 pacid=23140089 polypeptide=Lus10009596 locus=Lus10009596.g ID=Lus10009596.BGIv1.0 annot-version=v1.0 MDPTTLFNQLKVCVARFPHLFCILCVSSFLLIKHLLLLIHLPRGLFQSADPFFLLAGPNVIESEEHIFKMAKHIKAISTRVHFILSVFQKFMALLLSAQC EEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMANSAEKVRLSGNQNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSL QQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRNLEELLEELMAIAPLQKTAIEYSHGYKAARPKGAAHTENPS SIAAITSAGNNTIEAACVMENVPKMASSELSSRETLSDGDKTSVVDLDIISNRKSRRRRSYTSLLMTRSKSNNNPLGAYMSAQTDITPHMRGILINWLIE VHSKFQLMQETLYLMVTLLDQYLSQVQMKKNELQLVGLTALLLASKYEDFWHPRLQHLASYLIELCLVEYEALKFKPSMISASAIFVARCTLHIAPAWTP LLVEHARYDVLQLRYCVVHVFPRLVNIRRGSF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16340		ATKDSA2, ATKSDA	Aldolase superfamily protein (...		Lus10009596 [exp]	0	1
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10009595 [exp]	1.0	0.9332
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10001765 [exp]	4.2	0.9072
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10038765 [exp]	5.3	0.8930
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10004676 [exp]	5.9	0.8873
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10016448 [exp]	6.9	0.9071
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	9.5	0.8741
AT5G13520			peptidase M1 family protein (....		Lus10023479 [exp]	10.4	0.8811
AT4G38050			Xanthine/uracil permease famil...		Lus10035946 [exp]	11.6	0.8321
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10032562 [exp]	13.4	0.8676
AT2G46000			unknown protein		Lus10018829 [exp]	17.3	0.8688

Compare expression of checked genes

Lus10009596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.