Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16310 510 / 1e-180 Cation efflux family protein (.1) AT1G79520 492 / 6e-174 Cation efflux family protein (.1.2) AT2G39450 375 / 5e-128 ATMTP11 Cation efflux family protein (.1) AT3G58060 356 / 3e-120 Cation efflux family protein (.1) AT2G47830 59 / 3e-09 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001768 [exp] 813 / 0 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10040318 [exp] 411 / 3e-142 AT2G39450 587 / 0.0 Cation efflux family protein (.1) Lus10023439 [exp] 401 / 4e-138 AT2G39450 585 / 0.0 Cation efflux family protein (.1) Lus10016239 [exp] 366 / 2e-124 AT3G58060 574 / 0.0 Cation efflux family protein (.1) Lus10029304 [exp] 366 / 3e-124 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10000061 [exp] 354 / 2e-122 AT1G16310 165 / 6e-49 Cation efflux family protein (.1) Lus10016242 [exp] 100 / 5e-26 AT3G58060 119 / 1e-33 Cation efflux family protein (.1) Lus10040922 [exp] 59 / 3e-09 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172700 [exp] 604 / 0 AT1G16310 545 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 580 / 0 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.010G172600 [exp] 538 / 0 AT1G16310 504 / 2e-178 Cation efflux family protein (.1) Potri.010G172800 [exp] 504 / 1e-178 AT1G16310 585 / 0.0 Cation efflux family protein (.1) Potri.010G172900 [exp] 498 / 7e-176 AT1G16310 572 / 0.0 Cation efflux family protein (.1) Potri.008G049600 [exp] 417 / 1e-144 AT2G39450 595 / 0.0 Cation efflux family protein (.1) Potri.010G211300 [exp] 413 / 4e-143 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.003G215600 [exp] 357 / 5e-121 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.001G010200 [exp] 357 / 9e-121 AT3G58060 540 / 0.0 Cation efflux family protein (.1) Potri.001G010000 [exp] 351 / 2e-118 AT3G58060 529 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10009598 pacid=23140070 polypeptide=Lus10009598 locus=Lus10009598.g ID=Lus10009598.BGIv1.0 annot-version=v1.0 ATGGTGGGGAACCGTACGCCTAGTCCGCGAATCGATTCATTCGATTACAGAGTCGAGCTTCTGTCGCCACCACCACCGGGAGAGAGGGCAGCTCAAACCA GTTTACCTTCATGGCGTCTTGATATTGACAAATTCCAGCTCCCATCTGATACTACTACTTGTACTAGTACTACTACTATCAGTACTAGTACACCTCGGAG GCAGCAGCAGCGTCAAATCCCTTCTTTTCTTGCATCCCTGCGGAAGAAAGAAAGGAAGGTGGCACAATACTACAAGGCACAGCAGGACCTTGTGAAGGAG TTCAATGAAGTGGAGTCCTTCGCCGAGTGTGGGGTTATGCCGGGAGGAGAAATGACAGATAAGGAAATTAGAGATGTCGCTAGGGGCGAAAAGATTGCGA TATACGCGTCCAACGTGGCGAATCTGGTGCTGTTTGTGGCCAAAGTGTATGCTTCGATGGAGAGCAAATCGATGGCGGTCATTGCTTCCACGGTTGACTC TTTCCTGGACCTCATGTCAGGGTTCATCCTGTGGTTTACTGACCATGCCATGAGAAAGCCGAACCAGTATCGCTATCCGATTGGCAAACAGAGGATGCAG CCCGTGGGGATAGTTGTTTTTGCCTCGGTGATGGCGACTCTAGGGCTTCAAATCATCTTCGAATCTGGGCGGGAACTTATAGCTAAGGCTAAGCCGGAGT CGGATGCAAATAAAGTGGACTGGATGATCGGGATTATGACATCAGTGACGTTTATAAAGTTTGGGCTAACATTGTATTGTCGCGGATTCAAGAACGAAAT CGTGAGGGCGTACGCTCAGGACCATTTCTTCGATGTCATCACAAACTCAATCGGTTTGGGAGCGGCCGTTCTAGCTATCAAGTTCTATTGGTGGATCGAC CCGGTTGGGGCTATACTCATAGCGCTGTATACAATCTGGAACTGGTCAGGAACAGTGATGGAGAACGTGGGTTCGTTGATAGGGAGAACGGCGCCACCGG AGTACTTGGCCAAGTTGATATTCTTGATATGGAACCATCACCAGGAGATCAAGCATATTGACACTGTGAGAGCTTATACGTTTGGATGTCATTACTTTGT GGAAGCAGACATTGTGCTCCCTTCCGACATGTCTCTTTGCGAGGCGCATAACATAGGAGAGACGCTTCAGGAGAAGATTGAGCAGTTCCCTGAAGTGGAT CGAGCTTTCGTCCATGTCGATTTCGAGTTCACCCATCAACCAGAGCACAACCCCAAGCGATCATCTTCCAAATAG
AA sequence Show only first row Show all	>Lus10009598 pacid=23140070 polypeptide=Lus10009598 locus=Lus10009598.g ID=Lus10009598.BGIv1.0 annot-version=v1.0 MVGNRTPSPRIDSFDYRVELLSPPPPGERAAQTSLPSWRLDIDKFQLPSDTTTCTSTTTISTSTPRRQQQRQIPSFLASLRKKERKVAQYYKAQQDLVKE FNEVESFAECGVMPGGEMTDKEIRDVARGEKIAIYASNVANLVLFVAKVYASMESKSMAVIASTVDSFLDLMSGFILWFTDHAMRKPNQYRYPIGKQRMQ PVGIVVFASVMATLGLQIIFESGRELIAKAKPESDANKVDWMIGIMTSVTFIKFGLTLYCRGFKNEIVRAYAQDHFFDVITNSIGLGAAVLAIKFYWWID PVGAILIALYTIWNWSGTVMENVGSLIGRTAPPEYLAKLIFLIWNHHQEIKHIDTVRAYTFGCHYFVEADIVLPSDMSLCEAHNIGETLQEKIEQFPEVD RAFVHVDFEFTHQPEHNPKRSSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16310			Cation efflux family protein (...		Lus10009598 [exp]	0	1
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	1.0	0.9757
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	1.4	0.9696
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	3.0	0.9693
AT2G22850	bZIP	ATBZIP6	basic leucine-zipper 6 (.1.2)		Lus10019273 [exp]	3.7	0.9537
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	4.0	0.9659
AT2G20080			unknown protein		Lus10034960 [exp]	6.3	0.9431
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10007670 [exp]	6.5	0.9431
AT5G65980			Auxin efflux carrier family pr...		Lus10012708 [exp]	6.7	0.9510
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10009187 [exp]	7.0	0.9302
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025991 [exp]	8.4	0.9474

Compare expression of checked genes

Lus10009598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.