Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12760 380 / 2e-135 unknown protein AT1G15860 112 / 3e-30 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) AT3G28970 95 / 4e-23 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000875 [exp] 486 / 2e-177 AT3G12760 383 / 3e-136 unknown protein Lus10039198 [exp] 112 / 4e-30 AT1G15860 369 / 2e-131 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10013742 [exp] 114 / 5e-30 AT1G15860 367 / 5e-129 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10019598 [exp] 103 / 8e-27 AT1G15860 285 / 4e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10040019 [exp] 100 / 3e-25 AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10030685 [exp] 89 / 9e-21 AT3G28970 255 / 4e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10005235 [exp] 88 / 3e-20 AT3G28970 258 / 1e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10026216 [exp] 77 / 2e-17 AT1G15860 252 / 3e-86 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G083800 [exp] 437 / 2e-157 AT3G12760 415 / 1e-148 unknown protein Potri.018G112200 [exp] 112 / 2e-30 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.003G180300 [exp] 112 / 3e-30 AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.001G047900 [exp] 103 / 1e-26 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.004G122100 [exp] 97 / 8e-24 AT3G28970 296 / 3e-100 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.017G084300 [exp] 91 / 7e-22 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF03556 [flax] [poplar] Cullin_binding Cullin binding
Representative CDS sequence Show only first row Show all	>Lus10009599 pacid=23140094 polypeptide=Lus10009599 locus=Lus10009599.g ID=Lus10009599.BGIv1.0 annot-version=v1.0 ATGGCCATCACTGGGGCAAATGAGAAAGCTGCAGTTCAGGCTTTGAAGGCAAGTGATTGGCATCTTGAAGGGGCATTTGATGTGTTCTACAGCCAACCCC AGATTAAAACATCTACTGATTCCAGACATCTGGAAGAGCTTTACAATAGATATAAAGATCCATATATGGACATGATACTGGCTGATGGGATTGCTCGACT TTGCAATGACATTCAGGTCGATCCTCAAGACATCGTTATGTTAGTTGTTTCATGGCATATGAAGGCTGCCACCATGTGTGAATTCTCAAAGCAAGAATTT ATTGGTGGACTACAATCACTAGGAATAGATTCACTGGAAAAGTTCCGAGAAAGGGTACCATCTATGCGTTCTGAGATGAAAGATGAACAAAAGTTCGGCG AGATGTACAATTTTGCTTTCGGGTGGGCAAAGGAGAAAGGCCAAAAGTCTCTAGCACTGGATACGGCTATTGGTATGTGGCAATTACTATTTGCTGAAAA GCATTGGCCACTGGTTGATCACTGGTGCCAGTTCTTACAGGCTAAGCATAATAAAGCTATCTCAAGGGATACATGGTCTCAACTATTGGAATTTACCAGG ACGGTGGACCCTGAGCTGTTGAACTACGATGCTGAAGGGGCTTGGCCGTATTTGATAGACGAATTTGTCGAGTACCTGAACGAGAATGGAGTGGGGAAGG CTGTTTAG
AA sequence Show only first row Show all	>Lus10009599 pacid=23140094 polypeptide=Lus10009599 locus=Lus10009599.g ID=Lus10009599.BGIv1.0 annot-version=v1.0 MAITGANEKAAVQALKASDWHLEGAFDVFYSQPQIKTSTDSRHLEELYNRYKDPYMDMILADGIARLCNDIQVDPQDIVMLVVSWHMKAATMCEFSKQEF IGGLQSLGIDSLEKFRERVPSMRSEMKDEQKFGEMYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKHWPLVDHWCQFLQAKHNKAISRDTWSQLLEFTR TVDPELLNYDAEGAWPYLIDEFVEYLNENGVGKAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12760			unknown protein		Lus10009599 [exp]	0	1
AT3G02220			unknown protein		Lus10019392 [exp]	1.0	0.8807
AT1G01910			P-loop containing nucleoside t...		Lus10036552 [exp]	3.9	0.8345
AT3G58670			Protein of unknown function (D...		Lus10033603 [exp]	8.5	0.8405
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10014329 [exp]	10.1	0.8512
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	13.3	0.8617
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10010556 [exp]	13.4	0.8031
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	13.8	0.8160
AT1G13570			F-box/RNI-like superfamily pro...		Lus10040760 [exp]	14.7	0.8283
AT2G30530			unknown protein		Lus10034444 [exp]	15.2	0.7736
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	16.5	0.8027

Compare expression of checked genes

Lus10009599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.