Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13010 843 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G26560 444 / 1e-144 ATP-dependent RNA helicase, putative (.1) AT2G35340 404 / 1e-130 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT1G32490 404 / 2e-130 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT3G62310 349 / 2e-112 RNA helicase family protein (.1) AT2G47250 345 / 8e-111 RNA helicase family protein (.1) AT4G18465 314 / 2e-99 RNA helicase family protein (.1) AT1G26370 303 / 6e-95 RID1 RNA helicase family protein (.1) AT1G27900 281 / 9e-87 RNA helicase family protein (.1) AT4G16680 202 / 1e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000874 [exp] 619 / 0 AT5G13010 561 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10036783 [exp] 446 / 4e-145 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 404 / 2e-129 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037145 [exp] 366 / 2e-115 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10033690 [exp] 362 / 1e-112 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 331 / 3e-105 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 298 / 5e-93 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 289 / 1e-89 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10000873 [exp] 271 / 3e-81 AT5G13010 1063 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172500 [exp] 878 / 0 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.015G024400 [exp] 448 / 5e-146 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 445 / 1e-144 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 400 / 7e-129 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.002G192500 [exp] 347 / 1e-111 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 344 / 1e-110 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 316 / 4e-100 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 310 / 1e-97 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 298 / 5e-93 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.005G071500 [exp] 217 / 5e-61 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0021 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10009600 pacid=23140086 polypeptide=Lus10009600 locus=Lus10009600.g ID=Lus10009600.BGIv1.0 annot-version=v1.0 ATGGATATCCACATCAGCAGTGGTCCGGGCGATATCCTCATATTTATGACCGGGCAAGACGAGATCGAAGCAGCTTGTTACTCTCTTGCAGAGAGGATGG AACAGATGACTGCCTCCACCACTAAAGAGGTTCAGAAGCTTCTGATACTGCCTATATACTCTCAGCTTCCTGCTGATTTGCAGGCCAAGATATTCCAGAA ACCCGAGGATGGAGCTCGGAAATGCATCGTCGCCACCAACATTGCCGAGACTTCTTTGACCGTGGATGGAATCTTCTACGTCATCGACACTGGATATGGT AAAATGAAGGTTTATAATCCAAGGATGGGTATGGACGCCCTCCAAGTCTTTCCCGTGAGCCAAGCTGCCGCAAATCAGCGGTCTGGCCGAGCTGGTAGGA CCGGACCGGGTACATGCTACAGGCTTTACACCGAGAATGCGTACCAGAACGAGATGTTGCCGAGTCCGGTACCGGAGATTCAGAGGACAAACCTCGGTAA CGTGGTCTTACTGTTGAAGTCGCTTAAAGTAGAGAACTTGCTCGATTTTGATTTCATGGACCCACCTCCACAGGATAATATCCTCAACTCTATGTATCAG CTCTGGGTCCTGGGTGCATTGAATAACGTTGGAGGTTTGACCGAGCTTGGGTGGAAAATGGTGGAGTTCCCTTTAGATCCTCCGCTAGCTAAGATGCTTT TGATGGGAGATCGATTGGGATGTGTGAATGAGGTTTTGACGATTGTATCGATGCTCTCTGTCCCCTCCGTGTTTTTCCGCCCCAAGGATAGGGCAGAGGA GAGTGATGCTGCAAGAGAGAAGTTTTTCGTCCCGGAATCTGACCATTTGACTCTGCTCAATGTATACATGCAATGGAAAGAGCACCAATATCGTGGGGAT TGGTGTAACGACCATTATTTGCACGTCAAAGGGTTGCGTAAAGCTCGAGAAGTGAGATCCCAGCTGCTCGATATCCTCAAGGCGTTGAAAATCCCGTTGA CTTCTTGTGGACATGATTGGGACGTGATCCGGAAAGCAATCTGCTCGGCCTATTTCCACAATTCGGCGAGGTTGAAAGGTGTTGGGGAGTATGTTAATTG CAGGTCAGGGATGCCATGCCATTTGCACCCTACGAGCGCTCTGTATGGGCTGGGGTACACTCCAGATTACGTGGTTTACCACGAGCTGGTTTTGACGTCG AAAGAGTACATGCAGTGTGCGACTTCTGTGGAGGCGCAGTGGTTGGCTGAGCTGGGACCGATGTTCTTTTCGGTTAAGGACTCTGATACGTCGTTGTTGG AGCATAAGAAGAAGCAGAAGGAAGAGAAGACGGCAATGGAGGAGGAGATGGAGAATCTGAGGAAGGAGCAAGCGGAAGTGGAGAGGTTGAACAAGGAGAA GGAGAAGGTGAAGAGGGCGAAGGAGCAGCAGGTGATATCAATGCCGGGACTGCGCCAGGGCTCGTCGACTTACTTGCGGCCTAAGAAGTTTGGTCTGTAG
AA sequence Show only first row Show all	>Lus10009600 pacid=23140086 polypeptide=Lus10009600 locus=Lus10009600.g ID=Lus10009600.BGIv1.0 annot-version=v1.0 MDIHISSGPGDILIFMTGQDEIEAACYSLAERMEQMTASTTKEVQKLLILPIYSQLPADLQAKIFQKPEDGARKCIVATNIAETSLTVDGIFYVIDTGYG KMKVYNPRMGMDALQVFPVSQAAANQRSGRAGRTGPGTCYRLYTENAYQNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQ LWVLGALNNVGGLTELGWKMVEFPLDPPLAKMLLMGDRLGCVNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYMQWKEHQYRGD WCNDHYLHVKGLRKAREVRSQLLDILKALKIPLTSCGHDWDVIRKAICSAYFHNSARLKGVGEYVNCRSGMPCHLHPTSALYGLGYTPDYVVYHELVLTS KEYMQCATSVEAQWLAELGPMFFSVKDSDTSLLEHKKKQKEEKTAMEEEMENLRKEQAEVERLNKEKEKVKRAKEQQVISMPGLRQGSSTYLRPKKFGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10009600 [exp]	0	1
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10036520 [exp]	7.0	0.7897
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10010398 [exp]	20.1	0.7668
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10043139 [exp]	23.0	0.7539
AT3G26730			RING/U-box superfamily protein...		Lus10035163 [exp]	23.2	0.7670
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	23.4	0.7854
AT5G44090			Calcium-binding EF-hand family...		Lus10022907 [exp]	27.0	0.7766
AT1G78420			RING/U-box superfamily protein...		Lus10013709 [exp]	32.1	0.7574
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10033467 [exp]	43.5	0.7505
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	44.0	0.7636
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10023404 [exp]	45.2	0.7656

Compare expression of checked genes

Lus10009600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.