Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13010 811 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G26560 224 / 2e-61 ATP-dependent RNA helicase, putative (.1) AT2G47250 188 / 2e-50 RNA helicase family protein (.1) AT3G62310 188 / 3e-50 RNA helicase family protein (.1) AT2G35340 189 / 4e-50 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT1G32490 187 / 3e-49 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT4G16680 184 / 3e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G27900 174 / 8e-46 RNA helicase family protein (.1) AT1G26370 153 / 1e-38 RID1 RNA helicase family protein (.1) AT4G18465 144 / 7e-36 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000873 [exp] 1283 / 0 AT5G13010 1063 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Lus10036783 [exp] 221 / 4e-60 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10037145 [exp] 220 / 4e-60 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10027147 [exp] 197 / 1e-53 AT3G26560 555 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10005261 [exp] 185 / 5e-49 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10031647 [exp] 183 / 9e-48 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10036991 [exp] 172 / 6e-45 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 172 / 8e-45 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10033690 [exp] 161 / 2e-40 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172500 [exp] 944 / 0 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.012G034200 [exp] 226 / 4e-62 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G024400 [exp] 224 / 1e-61 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 194 / 2e-51 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.002G192500 [exp] 186 / 2e-49 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 185 / 3e-49 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 168 / 1e-43 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 149 / 2e-37 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.010G246000 [exp] 148 / 2e-36 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G117800 [exp] 140 / 6e-34 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009601 pacid=23140025 polypeptide=Lus10009601 locus=Lus10009601.g ID=Lus10009601.BGIv1.0 annot-version=v1.0 ATGAACATCGAAGAGGCAATGACCACACTAAAACCTGAGCAGAGTGGAGAAGGAGGATTGTTCCTTCCCGGGAAGGAGAGGTTGAAGTTTACCGCTCCTG AAAGGAAATCCCTTTTAGGATTAGATGCCCTTGCAAATTCAAAACGGGGTGGGTCTGATGTGACTCGGGGTTTTAAGGTCCCTACTCAGAGGATCGCTTC TACAATGGCATCAGTCGATGAGGATGAAGAGAATGGAACTTCTGGGCTAGACGAGGAAGGAGGGATCGATGATGTTGTAAGGAAGAATACGAGTCAGCGA AGATATCGTGAAACATCTGGCAGTGCTAGTCAGACAACTCGTACAGAAAGTACCATGACTAGAGAGCGATCTGTTGATGACACATCTCGCAATCAGCATT CAAGAGGACGTTCATCTTCATATGCACATAATACCTCCACTCCGATATCTCATCAGGATTCATCCAGGAGCCCGTCCAGAAGTCCATGGCGTCGGGGAGT TGATGACTACATCAGTGATCGAAGAGGCAAGAAAAATGATGTTAGGAGTGATAGTTTAAGGGATAGACACAGAAATGGAAGTGATCGTGAAGACCGAAGT TATGGAAGAGAATCCACACGTCGGTATGAAGATGACTATGACGGAAATTATGGAAGAAAACGCTCTAGAACATCAGGCAGATCAGACTGGGATGATGGAA GTGCGAGATGGGAATGGGAAGATACTCCTCGCCGTGATACACCCTCTCATTCAAGCCGGCACCATCGACCTTCACCATCCCCAATGTTTGTCGGGGCCTC GCCTGATGCACGTTTAGTTTCCCCATGGTTGGGTGGAAATACTCCATTTTCTGCTGGTTCTGCTGCTTCTCCCTGGGATCGGGTTACTCCTTCTCCTATC CCAATACGGGCTTCTGGGTCGTCATATAAGTCTTCTATTTCTAAACGTAATGCAAGGTCCGATCATTCAACATTCCCTTCTTCAAGTCCACAAAAATTAG AGGAAGGAGAAAAATCATTCCCATCTGAAGAACCTAATCTTGAGGTTACAGAGGACATGCGATTGGAAATGGAATACAATTCAGACCGAGCATGGTATGA TAGAGAAGAAGGTAACACAATGTTTGATACTAATAGCTCATCATTTTTCTTTGGAGATGAAGCTTCAACCCAGAAAAAAGAGGCAGAGCTGGCTAAAAAG CTGACTCGAAAAGATGGCTCCAAGATGTCACTAGCTCAAAGTAAGAAGTTATCTCAGCTTACTGCTGATAATGCCCAATGGGAAGACCGGCAACTCTTGA GATCGGGTGCTGTTAGAGGAACTGAGGTGCAGACTGAATTTGATGACGAGGATGAACGCAAAGTTATTCTCCTTGTGCATGATACCAAACCTCCTTTCTT GGATGGTAGAGTGGTTTTCACTAAACAAGCAGAGCCGGTAATGCCCTTAAAAGATCCCACATCAGATATGGCCATCATTTCGCGCAAAGGTTCTGCCTTA GTCAGGGAGATCCGCGAGAAGCAGAGTCAGAACAAGTCCCGCCAAAGATTTTGGGAACTTGCCGGCTCAAAACTTGGTGATATTCTTGGCGTTGAGAAAA CAGTGGAGCAAGTTGATGCTGATACTGCTGAAGTGGGTGAAGAAGGTGAAGTTAATTTCAAGCAGGAGGCAAAGTTCGCACAGCACATGAAGAAGGGGGA AGCTGTGAGCGATTTTGCTATGTCAAAAAGCATGTCAGAGCAGCGGAAGTATCTTCCCATTTACTCTGTTAGGGATGAACTGTTGCAGAATGGAATTGTT GGCTGCACCCACCCCCGCCGTGTTGCGGCTATGAGTGTTGCCAAAAGAGTTAGTGAAGAGATGGAGACGGAACTAGGGGATAAAGTTGGTTATGCAATCC GGTTTGAGGACGTGACTGGAAAGAACACTATAATTAAGTATATGACTGATGGAGTACTCCTACGTGAAACACTGAAAGATTCTGAATTGGATAAGTATCG GGTCGTTGTCATGGATGAAGCTCACGAGAGATCTTTGAACACAGACGTACTCTTTGGAATTTTGAAAAAAGTGGTTGCGCGACGTCGAGATTTCAAGCTC ATTGTGACATCCGCAACACTAAACTCTCAGAAGTTCTCACAATTTTTTGGAGGTGTACCAATATTCGAGATCCCAGGGAGAACTTTCCCCGTGATGACCT ATTTCAGCAAGACGCCCTGTGAAGATTACGGTGAAGATTAG
AA sequence Show only first row Show all	>Lus10009601 pacid=23140025 polypeptide=Lus10009601 locus=Lus10009601.g ID=Lus10009601.BGIv1.0 annot-version=v1.0 MNIEEAMTTLKPEQSGEGGLFLPGKERLKFTAPERKSLLGLDALANSKRGGSDVTRGFKVPTQRIASTMASVDEDEENGTSGLDEEGGIDDVVRKNTSQR RYRETSGSASQTTRTESTMTRERSVDDTSRNQHSRGRSSSYAHNTSTPISHQDSSRSPSRSPWRRGVDDYISDRRGKKNDVRSDSLRDRHRNGSDREDRS YGRESTRRYEDDYDGNYGRKRSRTSGRSDWDDGSARWEWEDTPRRDTPSHSSRHHRPSPSPMFVGASPDARLVSPWLGGNTPFSAGSAASPWDRVTPSPI PIRASGSSYKSSISKRNARSDHSTFPSSSPQKLEEGEKSFPSEEPNLEVTEDMRLEMEYNSDRAWYDREEGNTMFDTNSSSFFFGDEASTQKKEAELAKK LTRKDGSKMSLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVFTKQAEPVMPLKDPTSDMAIISRKGSAL VREIREKQSQNKSRQRFWELAGSKLGDILGVEKTVEQVDADTAEVGEEGEVNFKQEAKFAQHMKKGEAVSDFAMSKSMSEQRKYLPIYSVRDELLQNGIV GCTHPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGKNTIIKYMTDGVLLRETLKDSELDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKL IVTSATLNSQKFSQFFGGVPIFEIPGRTFPVMTYFSKTPCEDYGED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10009601 [exp]	0	1
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	3.5	0.9653
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	4.4	0.9666
AT5G15680			ARM repeat superfamily protein...		Lus10035142 [exp]	6.3	0.9652
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10033980 [exp]	7.1	0.9647
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	7.5	0.9656
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	8.0	0.9613
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	8.9	0.9571
AT4G39420			unknown protein		Lus10006814 [exp]	11.5	0.9623
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	13.0	0.9563
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10008796 [exp]	13.1	0.9586

Compare expression of checked genes

Lus10009601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.