Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16300 631 / 0 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT1G79530 625 / 0 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT3G04120 456 / 1e-160 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G13440 454 / 4e-160 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) AT1G42970 281 / 1e-90 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 259 / 7e-83 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 247 / 5e-78 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000872 [exp] 754 / 0 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10022332 [exp] 462 / 4e-163 AT1G13440 632 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Lus10015826 [exp] 458 / 1e-161 AT3G04120 606 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10011375 [exp] 456 / 1e-160 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10006435 [exp] 456 / 1e-160 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10032071 [exp] 456 / 1e-160 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10014603 [exp] 456 / 1e-160 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10036976 [exp] 444 / 2e-155 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10016033 [exp] 267 / 4e-85 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G083900 [exp] 661 / 0 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.010G172400 [exp] 652 / 0 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.001G335800 [exp] 457 / 2e-161 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.010G055400 [exp] 457 / 3e-161 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.012G094100 [exp] 454 / 5e-160 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.015G091400 [exp] 453 / 2e-159 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.008G179300 [exp] 443 / 1e-155 AT3G04120 573 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.002G007100 [exp] 270 / 1e-86 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.005G254100 [exp] 269 / 5e-86 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G220566 [exp] 248 / 2e-78 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00044 [flax] [poplar] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02800 [flax] [poplar] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009602 pacid=23140088 polypeptide=Lus10009602 locus=Lus10009602.g ID=Lus10009602.BGIv1.0 annot-version=v1.0 ATGGCCTTCTCCAGCCTCCTCAGATCTACCGCCGCCGCTGCTCCCCTCGCCGACGCAGCTACTCGATCCCCGCTCACTCCTTCCCTCCCTTGCGATCGCT TCAAGGTTTCGAGCGTTGGCTTCTCTTCAAAGGCCGTCCCTGTCTCAACAGCCTCTTATTCCTTCCAGACACGCAGTGGGAGAAGTGTCCAGCCCATCAA GGCCACCGCTACTGAAGCTCCTCCAACTGTTCTGAGATCGAGGACTGCTGGGAAGACTAAGGTTGGGATCAACGGGTTTGGGCGTATTGGAAGATTAGTT CTCCGTATTGCTACATCTAGGGATGATATTGATGTGGTGGCAGTCAATGATCCCTTTATTGATGCTAAATACATGGCTTACATGTTGAAGTATGACTCTA CTCATGGGAATTTCAACGGGACCATCACTGTTTTGGATGAGTCTACATTGGAAATAAACGGCAAACAAATCAAAATTTCCAGCAAGAGGGACCCTGCAGA TATTCCATGGGGTGATTATGGAGCAGAATATGTTGTTGAATCTTCTGGAGTCTTCACAACTATCGACAAGGCTGCAGCTCACAAAAAGGGAGGTGCTACA AAGGTGGTCATATCAGCTCCCTCTGCCGATGCACCAATGTTTGTTGTTGGAGTTAATGAGCAGACATACCAGCCAAACATGGATGTTGTCTCTAATGCAA GCTGCACGACAAATTGTCTTGCTCCCCTTGCCAAGGTGGTTCATGAAGAATTTGGTATTCTTGAAGGGTTGATGACAACCGTTCATGCAACTACAGCTAC CCAAAAGACTGTCGATGGCCCATCAATGAAAGATTGGCGTGGTGGTCGTGGAGCTAGTCAGAATATCATTCCAAGTTCTACTGGCGCAGCGAAGGCTGTT GGAAAGGTACTTCCAGAGCTGAACGGAAAACTTACTGGGATGGCTTTCCGTGTCCCAACACCTAATGTTTCTGTTGTGGACTTAACTTGCCGACTTGAGA AGAGTGCAACATACGATGATGTTAAAGCTGCTATTAAGTATGCATCTGAGGGACCATTGAAGGGCATTCTTGGATACACTGATGAGGATGTCGTTTCTAA TGATTTCGTTGGCGACTCAAGGTCAAGTATATTCGATGCGAAGGCTGGGATAGGGCTGAGCAGTTCCTTCATGAAGCTCGTGTCGTGGTACGACAACGAG TGGGGTTATAGCAACCGAGTTCTGGACCTCATCGAGCACATGGCGTTGGTAGCTTCCCTGAAGTGA
AA sequence Show only first row Show all	>Lus10009602 pacid=23140088 polypeptide=Lus10009602 locus=Lus10009602.g ID=Lus10009602.BGIv1.0 annot-version=v1.0 MAFSSLLRSTAAAAPLADAATRSPLTPSLPCDRFKVSSVGFSSKAVPVSTASYSFQTRSGRSVQPIKATATEAPPTVLRSRTAGKTKVGINGFGRIGRLV LRIATSRDDIDVVAVNDPFIDAKYMAYMLKYDSTHGNFNGTITVLDESTLEINGKQIKISSKRDPADIPWGDYGAEYVVESSGVFTTIDKAAAHKKGGAT KVVISAPSADAPMFVVGVNEQTYQPNMDVVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAV GKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSATYDDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSSSFMKLVSWYDNE WGYSNRVLDLIEHMALVASLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10009602 [exp]	0	1
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Lus10020163 [exp]	2.4	0.8799
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10005333 [exp]	7.2	0.8958
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10002385 [exp]	9.5	0.8608
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10034493 [exp]	9.6	0.8890
AT2G03640			Nuclear transport factor 2 (NT...		Lus10036918 [exp]	16.9	0.8955
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10004554 [exp]	23.2	0.8875
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10010887 [exp]	23.5	0.8755
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	26.1	0.8887
AT2G45060			Uncharacterised conserved prot...		Lus10042878 [exp]	27.0	0.8548
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Lus10032124 [exp]	28.5	0.8273

Compare expression of checked genes

Lus10009602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.