Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25190 129 / 8e-34 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G20815 64 / 8e-11 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039786 [exp] 81 / 3e-16 AT2G20815 218 / 3e-64 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G126000 [exp] 194 / 1e-58 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.013G146100 [exp] 69 / 1e-12 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.006G000400 [exp] 56 / 2e-08 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.016G000300 [exp] 52 / 3e-07 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [flax] [poplar] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Lus10009604 pacid=23140035 polypeptide=Lus10009604 locus=Lus10009604.g ID=Lus10009604.BGIv1.0 annot-version=v1.0 ATGGAACATCATTCTTCTTCTTGTTGCCGCCACCCACCCTCGCCGCGGCTTGCACGTAGTCGAAGCACGACTGAAGTTAACAATAATGCAATCCTTTCTC CATCGGCGACGTTGTTAAGTCGCAGTCAGAGACTCAACAACGTTGTGCGCTCAACATCCACAACCAAATCCCGAGACGCAAAAACCATAGCCAAAATCAA ACCGGTTGTTCAAAAACACAAAGATGGGCTGGTTCGGTTTCTTCCACGTGGCGAAAGCTCGGGTAGTCTGATCGCAGGCTCAACAAGTTCCAAACCCAGG CCTAATTACATCAAACAGTCCGGTCCATTATCTCCATCAGCTTGGGCCTTATCCCCAGGCCGATCCACTACTAACTACTTCCCAACTCCACTGCCACCTC CACCAGCTATGACAGAACCACAACGCCGCAGTAGTGGAGGCGGCGAAATGAGTAGCGTCTGGACGAAGTATTTCAAAAAAGGTTCGTCAACGACCAAAAA AGTTCAGGAAGAATGCCGGAGGAAGTTCAGAGTTGTGAACAGTACGTTGGTCCAGTGGAGATTCGCTAACGCGAAGGCAGAAGCAGCGGCAGATGCGAGG GAGCTTGTCGCACATGCGAAGCTGGTCAACGTGTTGCTTAGGATTTGGGAGAAGAGGAAAAGGGTAATGGAGAAACGGATGGAGATTCAAAGGATGAAGG TAGAGGAGAAGCTGAGTCGGATGATGAGCTGGCAGCTGATTCTACTGACTGAGTGGCAGAAAATGGAAAGGAAGAATGTTGAGGCGGTCAGTCGAGTGAC TCGGAAACTCGGTGCTGTTTCTGTGAAGGTGCCGTTACTTGACGACGTCAAGGGAGAAGTCGATTCGATCGAGGAGGCTTTGAGGACGGCGACGGAAGTC ATGAATGACATACAAGAATTGCTAAGCAAATTCTTCTTACAGTTGGAGAAAAATCTGTATTTACTAACGGAGTTAACAAGCGGTGTGGAACACCAAAGCC ATAAACTAGAAGAAATGGAGAAAATTATTGACGTTCTGGCTCATTTACTGGTGTGGGAGAACAATGTAAGAGTCGAATTCCTTCAGATGGTGGATAACTC GTTATAA
AA sequence Show only first row Show all	>Lus10009604 pacid=23140035 polypeptide=Lus10009604 locus=Lus10009604.g ID=Lus10009604.BGIv1.0 annot-version=v1.0 MEHHSSSCCRHPPSPRLARSRSTTEVNNNAILSPSATLLSRSQRLNNVVRSTSTTKSRDAKTIAKIKPVVQKHKDGLVRFLPRGESSGSLIAGSTSSKPR PNYIKQSGPLSPSAWALSPGRSTTNYFPTPLPPPPAMTEPQRRSSGGGEMSSVWTKYFKKGSSTTKKVQEECRRKFRVVNSTLVQWRFANAKAEAAADAR ELVAHAKLVNVLLRIWEKRKRVMEKRMEIQRMKVEEKLSRMMSWQLILLTEWQKMERKNVEAVSRVTRKLGAVSVKVPLLDDVKGEVDSIEEALRTATEV MNDIQELLSKFFLQLEKNLYLLTELTSGVEHQSHKLEEMEKIIDVLAHLLVWENNVRVEFLQMVDNSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Lus10009604 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10026585 [exp]	2.0	0.7829
					Lus10011438 [exp]	2.6	0.8084
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10018258 [exp]	9.5	0.6887
AT2G45220			Plant invertase/pectin methyle...		Lus10027206 [exp]	10.7	0.7339
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	12.8	0.7134
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10034859 [exp]	13.3	0.6481
AT4G20040			Pectin lyase-like superfamily ...		Lus10033240 [exp]	13.4	0.5853
AT1G30870			Peroxidase superfamily protein...		Lus10038393 [exp]	14.1	0.7074
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	15.2	0.6785
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	16.2	0.6785

Compare expression of checked genes

Lus10009604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.