Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07840 315 / 3e-102 Pectin lyase-like superfamily protein (.1) AT3G07830 306 / 8e-99 Pectin lyase-like superfamily protein (.1) AT5G48140 305 / 2e-98 Pectin lyase-like superfamily protein (.1) AT3G07820 301 / 8e-97 Pectin lyase-like superfamily protein (.1) AT3G14040 301 / 3e-96 Pectin lyase-like superfamily protein (.1) AT3G07850 298 / 5e-95 Pectin lyase-like superfamily protein (.1) AT1G02790 269 / 3e-84 PGA4 polygalacturonase 4 (.1) AT2G43890 261 / 3e-81 Pectin lyase-like superfamily protein (.1) AT1G17150 247 / 5e-76 Pectin lyase-like superfamily protein (.1) AT4G18180 246 / 2e-75 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009606 [exp] 707 / 0 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 357 / 6e-119 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 358 / 2e-118 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 358 / 3e-118 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 346 / 4e-114 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 346 / 6e-114 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 346 / 6e-114 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 343 / 1e-108 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10000870 [exp] 284 / 5e-92 AT2G23810 149 / 1e-43 tetraspanin8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067166 [exp] 342 / 7e-113 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 342 / 7e-113 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 342 / 7e-113 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 341 / 2e-112 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 335 / 6e-110 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 335 / 6e-110 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 335 / 6e-110 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 305 / 3e-98 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.010G011100 [exp] 267 / 1e-83 AT1G02790 295 / 1e-96 polygalacturonase 4 (.1) Potri.009G169100 [exp] 267 / 3e-83 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28 CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10009605 pacid=23140083 polypeptide=Lus10009605 locus=Lus10009605.g ID=Lus10009605.BGIv1.0 annot-version=v1.0 ATGGCGCCTCGTCCAAGCAACCTCGTCCTAACGATCCTCAACACCCTAACCCTCCTCGCCGGCCTCGCCCTCTTCGCCACCGGAATCTACCTATCCGTAA CCTCCTCTTCCTCCGCCCCACACTGCCAGACCTTCCTCCGAAACTCGCTCCTCATCTTAGGCTCCTTCGTCCTCCTCGTCTCCATCCTCGGCCTCCTCGG TTCGAGCAGGAGGAATAACGTCTTCCTCTGGCTCTACACCGTCCTCCTGCGCCTCCTTGTGGTCGGAGCCGTGGGTTTCACAGTGTTCATGCTCGTTGTG ACCAAGCAGCACCACGGTGGCGCCACGGTGGGCGATTTTTCCGGGTGGATGCGTCACCATTTTGCCAAGGGGCATAATTGGGACGTTGTGAGGAGTTGCC TCGTTGAAGGGCAGGTTTGTAACGTGGGGAGTGGGAGGAAAGCTCGCAACTCTACTTTAATGGTGGGCTGCTGCAAACCGCCGCCGGGATGCACACCGGA GAATGCCGACGCGACGATGGCGGCCACGGGGAACAAAGAAAAGCAGGGTGCTCCTGGAAATGAAGAGTGCGGGAAATGGAGCTCCGACCCGAAGAAGATG TGCTACAACTGCGAGAGATGCAAGGCCGGTTTCCTGAGCGAAGTGAGGAAGCAATGGAGGGCGGCGGGAGTGGCTCTTCTCTGCTTCGTGGTGTTCATGA TGGTAGTGCTCTGTATGGCTTGGTGCGCCATCAACAACAACAAGTTTGACTCCGAAGCGTTTGTCAAAGCCTGGTGTGCCGCATGCAAATCACCCACCCC CGCTAAAGTAGTAGTCCCACCGGGGGAGTACCTCACCGGAGTGACGAAGCTGCTTGGTCCATGCAATGCTCCGATCGAGCTTGAAATCAACGGCATCATC AAGGCACCCAAGGCCGTTGCTGGTGAAGACTGGTTGCTCATCGAAAGTATCAACGATATCAGGGTATTTGGCACCGGCACAGTCGATGGCCAAGGTGCAG AATGCTGGGAGAAAAAGATAAAGGATGATCGTTCACCGAACATTAGGTTCCAGCGCATCAACAACGGGTTGGTTGAGGGGCTCACGAGCAAAGACAGCAA GTTCTTCCACATGTCCACCCTCGGCGCCAAGAACTTGACCTTCAGACACCTGCACTTCATTGCTCCGGCCGAGAGCAGGAACACCGATGGCATCCACGTC AGCAGGTCATCATTCATCACAATTATCGACACCATCTTCGAGACGGGCGATGATTGTGTCTCCATAGCCGACGACATCGATACAGTTACCGTCAAGAACG TGAAGTGCGGGCCCGGCCACGGCATCAGCATCGGGAGCTTAGGGAAGTACGACACGGAGAAGCCGGTGAAGAATATCTGGGTCCAGAACTGCACCATCTC CAACTCCGATAACGGGGTCAGGATCAAGTCGTGGCCTGACAGGTTCGCCACATCGTTGACCGGCGTCCGTTTCGAGGACATCACATTGGACAACGTCGCG AACCCAATCATCGTCGACCAGCTGTACTGCCCTAATAACGAGTGTAAGGGCAAGTTGGGCCCGAGCAAGGTGCAGATCAGCGACATAACGTTCAAGAACG TGAAGGGAACTTCGAGTACGAAAGAGATCATCCAGCTCGTTTGTAGCAAAACCCTTCCTTGCGAGAACATCCAAATGACCGACATTGATATCTCTTTCAA AGGTGCTGTTGGTGAAGCAGTCTGCGAGAATGTGAAGCCGGTGCTTTCAGGGGTCATCAACCCACCAGGTTGCGGTGACGCCAAACAAGAATTATAG
AA sequence Show only first row Show all	>Lus10009605 pacid=23140083 polypeptide=Lus10009605 locus=Lus10009605.g ID=Lus10009605.BGIv1.0 annot-version=v1.0 MAPRPSNLVLTILNTLTLLAGLALFATGIYLSVTSSSSAPHCQTFLRNSLLILGSFVLLVSILGLLGSSRRNNVFLWLYTVLLRLLVVGAVGFTVFMLVV TKQHHGGATVGDFSGWMRHHFAKGHNWDVVRSCLVEGQVCNVGSGRKARNSTLMVGCCKPPPGCTPENADATMAATGNKEKQGAPGNEECGKWSSDPKKM CYNCERCKAGFLSEVRKQWRAAGVALLCFVVFMMVVLCMAWCAINNNKFDSEAFVKAWCAACKSPTPAKVVVPPGEYLTGVTKLLGPCNAPIELEINGII KAPKAVAGEDWLLIESINDIRVFGTGTVDGQGAECWEKKIKDDRSPNIRFQRINNGLVEGLTSKDSKFFHMSTLGAKNLTFRHLHFIAPAESRNTDGIHV SRSSFITIIDTIFETGDDCVSIADDIDTVTVKNVKCGPGHGISIGSLGKYDTEKPVKNIWVQNCTISNSDNGVRIKSWPDRFATSLTGVRFEDITLDNVA NPIIVDQLYCPNNECKGKLGPSKVQISDITFKNVKGTSSTKEIIQLVCSKTLPCENIQMTDIDISFKGAVGEAVCENVKPVLSGVINPPGCGDAKQEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07840			Pectin lyase-like superfamily ...		Lus10009605 [exp]	0	1
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	3.5	0.7794
AT1G11920			Pectin lyase-like superfamily ...		Lus10011258 [exp]	3.6	0.8297
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10040396 [exp]	4.2	0.7346
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10014137 [exp]	5.8	0.8071
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001036 [exp]	11.8	0.6908
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	12.5	0.7555
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	14.0	0.7294
AT4G35160			O-methyltransferase family pro...		Lus10007035 [exp]	14.1	0.7368
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10019993 [exp]	14.7	0.7267
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10034859 [exp]	16.4	0.6512

Compare expression of checked genes

Lus10009605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.