Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18520 198 / 2e-62 TET11 tetraspanin11 (.1) AT2G23810 167 / 2e-50 TET8 tetraspanin8 (.1) AT4G28050 167 / 2e-50 TET7 tetraspanin7 (.1) AT4G30430 164 / 2e-49 TET9 tetraspanin9 (.1) AT3G45600 161 / 5e-48 TET3 tetraspanin3 (.1) AT1G63260 143 / 2e-41 TET10 tetraspanin10 (.1.2.3) AT4G23410 137 / 9e-39 TET5 tetraspanin5 (.1) AT5G23030 136 / 9e-39 TET12 tetraspanin12 (.1) AT5G46700 130 / 4e-36 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT5G60220 130 / 8e-36 TET4 tetraspanin4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000869 [exp] 492 / 3e-178 AT1G18520 218 / 2e-70 tetraspanin11 (.1) Lus10019965 [exp] 179 / 3e-55 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10023216 [exp] 175 / 2e-53 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10008891 [exp] 174 / 4e-53 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10015494 [exp] 168 / 7e-51 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10038473 [exp] 148 / 5e-43 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10038964 [exp] 146 / 3e-42 AT4G28050 203 / 2e-64 tetraspanin7 (.1) Lus10008563 [exp] 141 / 2e-40 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10017336 [exp] 138 / 4e-39 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055700 [exp] 197 / 4e-62 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.015G055900 [exp] 180 / 1e-55 AT1G18520 163 / 3e-49 tetraspanin11 (.1) Potri.006G177900 [exp] 167 / 1e-50 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.018G099800 [exp] 167 / 2e-50 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.009G015100 [exp] 159 / 3e-47 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.008G041600 [exp] 155 / 1e-45 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.010G220300 [exp] 148 / 3e-43 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.001G129300 [exp] 145 / 3e-42 AT4G28050 162 / 1e-48 tetraspanin7 (.1) Potri.003G093000 [exp] 143 / 4e-41 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.001G107200 [exp] 140 / 4e-40 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10009607 pacid=23140078 polypeptide=Lus10009607 locus=Lus10009607.g ID=Lus10009607.BGIv1.0 annot-version=v1.0 ATGGTGAGCGTGAGCAACACGTTAGTGGCGATAATCAACACAATCCTACTCCTAATCGGCCTGGCGGCGATCGGGGTCGGCGTCACATTCGCCATCGGCG GCGGCCAGCAGACCCAGTGCCGTGAGGGCCTCGAGAAGCCCCTGATGGTCATGGGCGCGGCCATCTTTTTCGTCGCGACGATCGGGCTCGTGGGTTCGTG CTACCGGAACAATTTCTTCCTGTTCGTGTACTTGGTCGTCATGTTCACGATCATTGTCGCTTTACTTTTAGCGACAGTTTTTTTAATATTTGTGACGAAC CAAACTATAGCCAGGACGGTGACGAAGATGAAGATTTACAATCTGGACGGGTGGCTTAGGAGGAATTACGCGAATGAGGAGAACTGGGTTGGGATAAGGA GTTGTTTGGTTGATGCTGAGATCTGCCGGAAGGTTGTCGCCGGTGACGAGCAGAGTACCGTCGTTGATTTTGTCAAGAAAAGATTGTCCTCTACTCAGTC TGGCTGCTGCACACCACCACAATCCTGCGGCTTTGCAATGAAGAACTCGACGTTCTGGATACCTCCGAAGAACTGGACCGCGTCAAAGACCACAGACCGA GACTGCAACACGTGGAGCAACAAGCAGACCAACCTCTGCTACGATTGCGAGTCGTGCAAGGCCGCATTTGTATCCAGCATCAAGCGCCAGTGGAGGATAC TGGCCATTGTCAATGTCTGTGTTCTCATCTTCGCCATCACTGTCTACATTATCGGCTGCTACGCTCGCTTCAGCAACTCATCCCCATCTCCCTCTTCCAA TCGAAAGTATTTCGGTGGGAAACTGCCTTGA
AA sequence Show only first row Show all	>Lus10009607 pacid=23140078 polypeptide=Lus10009607 locus=Lus10009607.g ID=Lus10009607.BGIv1.0 annot-version=v1.0 MVSVSNTLVAIINTILLLIGLAAIGVGVTFAIGGGQQTQCREGLEKPLMVMGAAIFFVATIGLVGSCYRNNFFLFVYLVVMFTIIVALLLATVFLIFVTN QTIARTVTKMKIYNLDGWLRRNYANEENWVGIRSCLVDAEICRKVVAGDEQSTVVDFVKKRLSSTQSGCCTPPQSCGFAMKNSTFWIPPKNWTASKTTDR DCNTWSNKQTNLCYDCESCKAAFVSSIKRQWRILAIVNVCVLIFAITVYIIGCYARFSNSSPSPSSNRKYFGGKLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18520		TET11	tetraspanin11 (.1)		Lus10009607 [exp]	0	1
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10041709 [exp]	4.0	0.6293
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10043234 [exp]	5.7	0.6200
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10012075 [exp]	33.8	0.6100
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10023544 [exp]	44.5	0.5386
					Lus10001825 [exp]	70.8	0.5278
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	71.0	0.5324
					Lus10009611 [exp]	77.1	0.5294
					Lus10018446 [exp]	77.2	0.5284
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	83.1	0.5177
AT5G49180			Plant invertase/pectin methyle...		Lus10003968 [exp]	89.9	0.5123

Compare expression of checked genes

Lus10009607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.