Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23040 290 / 2e-100 CDF1 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) AT3G51140 105 / 1e-27 Protein of unknown function (DUF3353) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000868 [exp] 348 / 7e-123 AT5G23040 359 / 3e-126 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10038965 [exp] 311 / 3e-108 AT5G23040 361 / 3e-127 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10027257 [exp] 304 / 1e-97 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10041816 [exp] 108 / 3e-28 AT3G51140 328 / 3e-112 Protein of unknown function (DUF3353) (.1) Lus10027826 [exp] 53 / 2e-08 AT2G20920 309 / 7e-106 Protein of unknown function (DUF3353) (.1) Lus10005055 [exp] 52 / 4e-08 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10005056 [exp] 52 / 4e-08 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10025079 [exp] 44 / 3e-05 AT2G20920 333 / 5e-115 Protein of unknown function (DUF3353) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G057700 [exp] 303 / 2e-105 AT5G23040 316 / 3e-109 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Potri.007G015600 [exp] 110 / 1e-29 AT3G51140 331 / 1e-114 Protein of unknown function (DUF3353) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [flax] [poplar] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Lus10009608 pacid=23140052 polypeptide=Lus10009608 locus=Lus10009608.g ID=Lus10009608.BGIv1.0 annot-version=v1.0 ATGAAGGTTTGGGATCCTTACAAGCGTCTGGGAGTGAGCCCTGATGCATCCGAGGAGGAAGTTTGGGATGCACGAAATTTCCTTAGGGAACAATATGCAG GGCATGAGAGCAGCGAGGAATCTATCGAGGCGGCTTTCGAGAAACTCTTGATGACCAGCTTTAAGCAACGTAAGAAGACGAAGATCAACCTGAAAACCAA GCTGAAGAAGCAGGTTGATGAGTCTCCCGCTTGGGTGAAGAACTTGCTCGGGTTGGTGGAAATGCCTCCCATGGACATCATTTTCAGGAGGCTGTTCCTT TTCGCGTTCATGGGCGGCTGGAGCATCATGAATTCTGCAGATGGTGGACCTGCTTTCCAGGTAGCAGTCTCTCTGGCTGCGTGCATATATTTCCTGAATG AGAAGACAAAGAGCTTGGGTAGAGCCTTCATCATTGGGCTAGGAGCTCTCGCTACCGGGTGGATATGCGGGTCAGTGGTGGTTCCTCTGGTTCCAACTTT CCTCATACACCCTACTTGGACTCTCGAGCTCATGACATCGTTGGTAGCTTACTTTTTCTTGTTCCTCGGCTGCACTTTCTTCAAATAA
AA sequence Show only first row Show all	>Lus10009608 pacid=23140052 polypeptide=Lus10009608 locus=Lus10009608.g ID=Lus10009608.BGIv1.0 annot-version=v1.0 MKVWDPYKRLGVSPDASEEEVWDARNFLREQYAGHESSEESIEAAFEKLLMTSFKQRKKTKINLKTKLKKQVDESPAWVKNLLGLVEMPPMDIIFRRLFL FAFMGGWSIMNSADGGPAFQVAVSLAACIYFLNEKTKSLGRAFIIGLGALATGWICGSVVVPLVPTFLIHPTWTLELMTSLVAYFFLFLGCTFFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10009608 [exp]	0	1
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	1.0	0.8887
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	4.9	0.8618
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10021053 [exp]	6.9	0.8378
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10012848 [exp]	8.1	0.8404
AT1G06475			unknown protein		Lus10015269 [exp]	9.8	0.8335
AT2G34510			Protein of unknown function, D...		Lus10023314 [exp]	11.5	0.8157
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	12.5	0.8151
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	12.7	0.8282
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	13.6	0.8353
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031266 [exp]	14.4	0.8262

Compare expression of checked genes

Lus10009608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.