Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23060 424 / 1e-147 CaS calcium sensing receptor (.1) AT3G59780 76 / 1e-14 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000867 [exp] 669 / 0 AT5G23060 466 / 2e-164 calcium sensing receptor (.1) Lus10027050 [exp] 70 / 1e-12 AT3G59780 562 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10025587 [exp] 70 / 1e-12 AT3G59780 510 / 5e-173 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G052200 [exp] 439 / 1e-153 AT5G23060 490 / 6e-174 calcium sensing receptor (.1) Potri.013G128300 [exp] 72 / 2e-13 AT3G59780 610 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10009609 pacid=23140101 polypeptide=Lus10009609 locus=Lus10009609.g ID=Lus10009609.BGIv1.0 annot-version=v1.0 ATGGCGCTGAGATCTCCAGTTGCCGCCAAGCTCACCCTCTCCACACCATCATCTTCTTCGTCTCCATCTGCTTCAACTTCTTCTTTTTCATCTAAGCTCC ATTTCTCCAAACCCACCAAAACCCAGCTCAAACGCCCACCAATATCCTCCTCCGTCTCACTCCCAGCTTCAACCACCATCTCCCTCTTCACCCTCTTCAC ATCCACCCCGTTCGAAGCTCGAGCCCTCTCCACCTCCAAGGACCAGATCGCCTCTTACATAGCTGAGATAGACAAGACGGTCGATCAGGTAGTGGATGTC GGTTTTGCCGCTTTCGGCACTGCTGCAAGTATCTTCTCAAGTGTCAGCAATGCTGTTAAGCCGGCAGTCGAGTTTGCCGTCCCGATTGCGAAGCAGGCCG GAGAGCAGGTGGTGAAGATTGCTTCCCCCGTCGCTTCAGAGCTGTCAAGGAAGGCTCAGGAGGTTATTCAGAGCAGCGGCGTTGATACTCAGCCTGTAGT TTCTGCTGCCAAGATAGTGGCTGGAGTTGCACAGGAGTCGGGCAAGGTACTCGAAGGCGCAAAGCCATTAGCTTCGTCGACGGTTGAGACCATAGCGTCT TCAGATCCTGTAGTGTTCGCTGTAGCACTGGAAGCCGGTATAACTCTCTACTTCCTCTTGCCTCCGGTATGGTCTGCGTTTTCGTTCTACCTCCGTGGCT ACCAAGGTGACCTTACTGCTGCTCAAGCACTTGATCTAATATCAACCAAGAACCATGTCCTGATCGACATCCGATCGGAGAAGGACAAGGACAAAGCCGG CATCCCTCGCCTCCCATCCAATGCCAAGAACAAGATGGTGTCGATACCACTGGAAGAACTACCAAGCAAGCTGAAAGGCTTGGTCAAGAACACCAAGAAG CTGGAAGCCGAGCTAGCAGCACTGAAGATCTCGTACCTCAAGAGAGTCAACAAAGGTTCCAACATCGTCATCCTCGACTCATACGCCGATTCAGCAAAGA CAGTGGCCCGAACGCTGACCAGCCTCGGGTTCAAGAACTGCTGGGTTGTGGGAGGCGGGTTCTCGGGTGGGAGAGGGTGGCTGCAGAGTCGGCTGGGGAC AGATTCGTACAATGTGTCGTTTGCGGAGATCATCTCCCCCTCTCGGATCATCCCTGCTGCCACGAAGCGATTTGGCACCAGCAAGTTGCTTCCTGGTGGA GCTGATTGA
AA sequence Show only first row Show all	>Lus10009609 pacid=23140101 polypeptide=Lus10009609 locus=Lus10009609.g ID=Lus10009609.BGIv1.0 annot-version=v1.0 MALRSPVAAKLTLSTPSSSSSPSASTSSFSSKLHFSKPTKTQLKRPPISSSVSLPASTTISLFTLFTSTPFEARALSTSKDQIASYIAEIDKTVDQVVDV GFAAFGTAASIFSSVSNAVKPAVEFAVPIAKQAGEQVVKIASPVASELSRKAQEVIQSSGVDTQPVVSAAKIVAGVAQESGKVLEGAKPLASSTVETIAS SDPVVFAVALEAGITLYFLLPPVWSAFSFYLRGYQGDLTAAQALDLISTKNHVLIDIRSEKDKDKAGIPRLPSNAKNKMVSIPLEELPSKLKGLVKNTKK LEAELAALKISYLKRVNKGSNIVILDSYADSAKTVARTLTSLGFKNCWVVGGGFSGGRGWLQSRLGTDSYNVSFAEIISPSRIIPAATKRFGTSKLLPGG AD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10009609 [exp]	0	1
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10028969 [exp]	1.0	0.9496
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10009540 [exp]	2.4	0.9305
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10000867 [exp]	2.4	0.9442
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10002829 [exp]	3.0	0.9276
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10018163 [exp]	3.2	0.9480
AT1G16080			unknown protein		Lus10041625 [exp]	5.9	0.9295
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10022599 [exp]	6.3	0.9079
AT5G42070			unknown protein		Lus10023063 [exp]	8.5	0.9377
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10012452 [exp]	8.9	0.9331
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10036729 [exp]	10.8	0.9042

Compare expression of checked genes

Lus10009609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.