Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69670 283 / 3e-91 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT1G26830 276 / 2e-88 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT5G46210 91 / 7e-21 CUL4, ATCUL4 cullin4 (.1) AT1G59800 81 / 3e-18 Cullin family protein (.1) AT4G02570 77 / 6e-16 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G43140 69 / 2e-13 Cullin family protein (.1) AT1G59790 61 / 8e-11 Cullin family protein (.1) AT1G02980 59 / 6e-10 ATCUL2, CUL2 cullin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036739 [exp] 325 / 4e-107 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 325 / 4e-107 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 308 / 8e-101 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 308 / 1e-100 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 84 / 1e-18 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10038504 [exp] 82 / 1e-17 AT5G46210 913 / 0.0 cullin4 (.1) Lus10032200 [exp] 70 / 1e-13 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 69 / 3e-13 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 65 / 8e-12 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093200 [exp] 310 / 1e-101 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.008G148300 [exp] 307 / 1e-100 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 89 / 4e-20 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 85 / 1e-18 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.001G117200 [exp] 80 / 4e-17 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 76 / 1e-15 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G224075 [exp] 67 / 3e-14 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G217300 [exp] 71 / 5e-14 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 69 / 4e-13 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.005G027800 [exp] 47 / 3e-06 AT4G02570 143 / 2e-38 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [flax] [poplar] Cullin Cullin family
Representative CDS sequence Show only first row Show all	>Lus10009610 pacid=23140108 polypeptide=Lus10009610 locus=Lus10009610.g ID=Lus10009610.BGIv1.0 annot-version=v1.0 ATGAGTAACCAGAAGATGCCGACCTTCAGCATAGAGGCGTTCAAGTACAATCCTCAGGTGGCGGTGGATCCGAATTACGCAGATGAGACCTGGAAGGTCC TCGAACATGCCATTCACCGGATTTACAACCACAACGCCACCGGCCTCGACTTCCATGAGCTCTACAGCTGTGATGATGAATTGAAGCAAACAGTAACGTT TGTTTCCAGGAATGCTTACAATATGGTTCTGTACAAGTCCGGCGAGAAGTTGTACTCCGGCCTGGTTTCGACAATGACTCGTCATCTAAACGAGATGTCC AAGTCAATCGAGGCCGCCCAAAGGGAAGAATCCTTTCTGGAGGAGCTGAACAGGAAGTGGGATGATCACAACAAAGCACTTCAGTTGATCAGAGACATAG TGATGTACATGGATAGAACTTACATTCCTAGCACTGGTAAGACCCCTGTTCGCGAGCTTGGCCTCAACCTCTGGAGAGATTATGTTATTCACTCCGGCGA AATCCAGCCCAGGCTATTGAATGCACTTCTCTCAGCCATTAGCAAAGAGCGAAGTGGCGAAATCATAGACCGTGGCCTGATGAGAAACGTAATCAAGATG CTCAAGGATGTAGGTTCTGCCGTTTACCAAGAAGACTTTGAGAAGCATTTTCTTCAAATTTCTGAGGGTGAAGTCGGAATTTCCAGTGGAATTAGTGCCG CGTGA
AA sequence Show only first row Show all	>Lus10009610 pacid=23140108 polypeptide=Lus10009610 locus=Lus10009610.g ID=Lus10009610.BGIv1.0 annot-version=v1.0 MSNQKMPTFSIEAFKYNPQVAVDPNYADETWKVLEHAIHRIYNHNATGLDFHELYSCDDELKQTVTFVSRNAYNMVLYKSGEKLYSGLVSTMTRHLNEMS KSIEAAQREESFLEELNRKWDDHNKALQLIRDIVMYMDRTYIPSTGKTPVRELGLNLWRDYVIHSGEIQPRLLNALLSAISKERSGEIIDRGLMRNVIKM LKDVGSAVYQEDFEKHFLQISEGEVGISSGISAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69670		CUL3B, ATCUL3B	ARABIDOPSIS THALIANA CULLIN 3B...		Lus10009610 [exp]	0	1
					Lus10008211 [exp]	1.4	0.9488
AT2G18680			unknown protein		Lus10023204 [exp]	2.4	0.9457
					Lus10023997 [exp]	6.6	0.9252
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	16.7	0.9477
AT2G18210			unknown protein		Lus10028324 [exp]	20.4	0.9446
AT3G15518			unknown protein		Lus10032656 [exp]	23.9	0.8991
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10035241 [exp]	24.8	0.9418
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	27.8	0.8918
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	29.5	0.9448
AT1G80450			VQ motif-containing protein (....		Lus10042423 [exp]	32.2	0.9318

Compare expression of checked genes

Lus10009610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.