Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27900 1295 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000865 [exp] 1715 / 0 AT2G27900 1143 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G002900 [exp] 1368 / 0 AT2G27900 1333 / 0.0 unknown protein Potri.001G212600 [exp] 1361 / 0 AT2G27900 1301 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF10475 [flax] [poplar] Vps54_N Vacuolar-sorting protein 54, of GARP complex CL0295 [flax] [poplar] PF10474 [flax] [poplar] DUF2451 Protein of unknown function C-terminus (DUF2451)
Representative CDS sequence Show only first row Show all	>Lus10009613 pacid=23140059 polypeptide=Lus10009613 locus=Lus10009613.g ID=Lus10009613.BGIv1.0 annot-version=v1.0 ATGCAGCCGAATCCGTTCCCATTCGGCAACGTGCTTGTGAATCCGTTTCTTTTCAATGGAGATTTAGGCGAGCTCGGTGGAGCTGGATTAGGATTCGAGA GCTCAAGGGTTTTCTTCTTGCTTCCTTTTCTCTTGTCCCAAGGAGGTGGAATGGATTTGTCCAAGGTCGGGGAAAAGCTTCTGAGCTCTGTACGGTCTGC TAGATCCCTTGGATTACTCCCTCCCGTCTCTGATCGACCTGAGGTTCCAGCCCGAGCAGCAGCAGCAGCAGCTGTTGCTCGTGCAATTGCAGCATTGCCT CCCCATCAGCGCTATAGTCTTCCTTCAAGTTCTGAAGACTTATGCTCAATCTATGGAAGCAGACCACAAGATCAAGTGGTGGAGGAGCTAGAAGAAGATT TCTACGAAGAGAACTTTGATCCGATTAGACATATACTGGAGATGATTACTTCTGAAGAAACTGAAGTGACATATTTTGAGAAACAGGCTGCTCTTAGATT AGCCCAACTGGACAGGGTAGCAGAGCATTTATCTCATCATGTTATGAGAAACTATGAAGTAATGGTGAAGGGAATGAACTTGGTGAGGGAGTTAGAGAAA GACATAAAGATTGCAAATATTATCTGCATGAATGGGAGGAGGAATCTCACATCATCCATGAATGAGGTCTCGAGGGATCTTGTAGTGAATACCAGTTCAA AAAAGAAGCAAGCTCTATTGGACATTATTCCAATATTAAATGAGCTTCGCCATGCCGTCGACATGCAAGCAAAACTTGAATCCCTTGTTGAAGAAGGAAA CTACTGCAAGGCATTCCAGGTCCTATCTGAATACTTACAGCTTTTAGATAGTTTATCAGAACTTTCAGCAGCACAAGAGATGAGCCGTGCAGTTGAGGTT TGGTTGGGCAGAACCCTTCAGAAGCTAGATGCACTTCTTTTAGGAGTGTGCCAGGACTTCAAGGAGGAGAGTTATATTATTATTCTGAAATCAACTTATG TCCTCACGGGATATTTGGGAAAGGCAAACACCATATGCTTAGGAACATCTGAACACCACTTGGCTAAAATTAAAAGCATAATCAAACACCTCTTTAGTAG TGCCTCCTTCCTCCACTCCTTTGATTTGAAGATCCTTCCTGCAAATGAGTTACCATCCCAATTCTTCATTCTTTATCAGGATCAGCAGGTTCAAAAGCAG AACAGTAGACTTACCTACAGTGATCTATGCCTTCAGATACCAGAATCCAAGTTTAGACAGTGTCTGTTGAGAACCCTTGCCGCCTTGTTTAAGTTGATGT GCTCATATCACGAAATCATGAGCTTTCAGATGGATGACAAGGTAGTCAAAGTCCTATCTGTTTACCCTAATTTAGTATATCAGACTTCAACCGTGAACCA TCAGCAAGGTGATCGGTCCGAGCATGGCACTGACTCCCAAAGAACGCATAATTCACAAGTTGTTCCCGAGTCTTCTCATTTTGTAGAGAGACTCTCTGAT CTAACTCCAGCTGAGGAATCCATTTCTGGTTCTTCCGTTGGTGCAACAGGATCCACAGATCCCGTGGCTCCAGATAAGATTGTTAACGAGGGAAGGAATG ATAGTTCTGAAGCTTCAAGTAGTGGATCCCCTTGGTATCAGCTGCGGAAAGATGCTACAACATGTGTTTCTCAAACCCTTCAAAGAGGAAGGAAAAATAT TTGGCAACTGACAACGAGTCGAGTATTGGTATTGCTCTCCTCTGGGGCAGTAGGTTCAATGAGCATTCACCAGTTTTTGAAAAATTATGAAGACCTAAAT ATGTTTATCTTAGCCGGGGAAGCATTTAGCGGGGTCGAAGCAGTTGAGTTCAGACAAAAGTTGAAGGGTGTCTGTGAAAATTATTTTGCAGCCTTCCACC GGCAGAATATATATGCACTCAAAATGGTTTTAGAGAAGGAAACTTGGATGAAATTGCCTCCAGAAACAGCACAAGTAGTGAGTTTTGCTGGCCTAGTTGG TGATGGAGCACCAGTCATCACTCAGTCTGGGAGGAAGTCAGCTGGATCTCAGTTGCACCTATCTGCTAAATCCATGAACGCTGTTGATGTCAATTCAAGG AAGAGTGGATTTACAAGCTGGCTTAAAAGTGGAAACCCATTTGTTGTGAAAGTTATGCACATTGCTAGAGATGGTCTTGATTCTCCCCATGTCAATGGTA GTGGTGGGGAATTTGGATCACATCTCAATAATCATGCAAATGGAACTCAGGTTTCTGAAGATGAAAATGAAGATCTACTCGCAGACTTTATTGATGAAGA TAGTCAACTCCCTAGTCGAAAACTAGGTCTTCCAAGGACCAACTCAGTACACTGGAAAAATGATGACGCGACAGCACAGACTGGATCTTCTCTTTGTCTA TTAAGGTCGATGGATAAATATGCCAGGCTCATGCAGAAACTAGAAATAGTTAATGTTGAATTTTTTAAGGGAATTTGTCAGCTCTTTGAGGTGTTTTATT ATTTTGTTTTCGACGTATTTGGTGGACAAAATTCTTCCTCGATTGGAAAAAATTCTCCTGACGTCCTAAATCATCGTGTGAAGACTGCCTTATCAAAGAT ATCTCAAGACTGTGAGCAGTGGATAAAGCCCCAGACTATTCACTCAGCATCATCACTGCCTACCTCAAGTACATATACACACACAGATATCGTTCCTAGC TGTCCGTCAAATCATTCCCCAGCTTCTCTCAGTCTCAAGGAAAGATGTGCAGGTGCCGACACATCATCAGTTGTTGCTCGAATATTGCATAGATCTAAAG CCCATCTCCAGTCGATGCTTCTACAAAAGAATCCAACATTAGTTGAGGATTTCTATGCAAACCTGGTGGATTCTGTACCAGATCTTAGTGAGCACATACA TAGAACAACTGCAAGACTTTTGCTTCACATTGATGGATATGTCGATAGGATTGCTACTGCGAAATGGGAAGTAAAAGAGCTCGGACTTGAGCATAATGGG TACGTTGATTTATTGCTGGGAGAGTTCAAGCACTATAAAACACGGCTTGCTCATGGAGGAATTCACAAAGAGGTGCAAGACCTGCTGCTAGAATACGGTG TAGAAATCATCGCCGCCACTCTCATCGAAGGGCTATCCAGAGTAAAGAAATGCACCGACGAAGGGCGTGCTCTAATGTCATTGGATCTTCAGGTGCTGAT AAATGGGCTACAACATTTTGTTCCGGGGAACGTGAAACCAAAGATGCAGACAGTAGAAACTTTCATCAAGGCTTACTATCTTCCCGAAACCGAGTACGTC CATTGGGCTCGCGCTCACCCGGAGTACACAAAAAGCCAGGTGGTGGGACTGGTGAACCTGGTGGCCACCATGAAAGGCTGGAAGAGGAAAACCAGGCTGG AAGCCATCGAAAAGATCGAGTCAAGCAGCTAA
AA sequence Show only first row Show all	>Lus10009613 pacid=23140059 polypeptide=Lus10009613 locus=Lus10009613.g ID=Lus10009613.BGIv1.0 annot-version=v1.0 MQPNPFPFGNVLVNPFLFNGDLGELGGAGLGFESSRVFFLLPFLLSQGGGMDLSKVGEKLLSSVRSARSLGLLPPVSDRPEVPARAAAAAAVARAIAALP PHQRYSLPSSSEDLCSIYGSRPQDQVVEELEEDFYEENFDPIRHILEMITSEETEVTYFEKQAALRLAQLDRVAEHLSHHVMRNYEVMVKGMNLVRELEK DIKIANIICMNGRRNLTSSMNEVSRDLVVNTSSKKKQALLDIIPILNELRHAVDMQAKLESLVEEGNYCKAFQVLSEYLQLLDSLSELSAAQEMSRAVEV WLGRTLQKLDALLLGVCQDFKEESYIIILKSTYVLTGYLGKANTICLGTSEHHLAKIKSIIKHLFSSASFLHSFDLKILPANELPSQFFILYQDQQVQKQ NSRLTYSDLCLQIPESKFRQCLLRTLAALFKLMCSYHEIMSFQMDDKVVKVLSVYPNLVYQTSTVNHQQGDRSEHGTDSQRTHNSQVVPESSHFVERLSD LTPAEESISGSSVGATGSTDPVAPDKIVNEGRNDSSEASSSGSPWYQLRKDATTCVSQTLQRGRKNIWQLTTSRVLVLLSSGAVGSMSIHQFLKNYEDLN MFILAGEAFSGVEAVEFRQKLKGVCENYFAAFHRQNIYALKMVLEKETWMKLPPETAQVVSFAGLVGDGAPVITQSGRKSAGSQLHLSAKSMNAVDVNSR KSGFTSWLKSGNPFVVKVMHIARDGLDSPHVNGSGGEFGSHLNNHANGTQVSEDENEDLLADFIDEDSQLPSRKLGLPRTNSVHWKNDDATAQTGSSLCL LRSMDKYARLMQKLEIVNVEFFKGICQLFEVFYYFVFDVFGGQNSSSIGKNSPDVLNHRVKTALSKISQDCEQWIKPQTIHSASSLPTSSTYTHTDIVPS CPSNHSPASLSLKERCAGADTSSVVARILHRSKAHLQSMLLQKNPTLVEDFYANLVDSVPDLSEHIHRTTARLLLHIDGYVDRIATAKWEVKELGLEHNG YVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIIAATLIEGLSRVKKCTDEGRALMSLDLQVLINGLQHFVPGNVKPKMQTVETFIKAYYLPETEYV HWARAHPEYTKSQVVGLVNLVATMKGWKRKTRLEAIEKIESSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27900			unknown protein		Lus10009613 [exp]	0	1
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10002104 [exp]	1.0	0.9581
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028402 [exp]	2.8	0.9170
AT1G61850			phospholipases;galactolipases ...		Lus10018349 [exp]	3.5	0.9291
AT3G12020			P-loop containing nucleoside t...		Lus10016236 [exp]	3.9	0.8950
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	3.9	0.9136
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	5.5	0.9256
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	5.5	0.8858
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	6.9	0.9004
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010173 [exp]	8.4	0.8973
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10007014 [exp]	8.7	0.8907

Compare expression of checked genes

Lus10009613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.