Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23090 270 / 5e-94 CCAAT NF-YB13 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) AT5G08190 239 / 2e-81 CCAAT NF-YB12 "nuclear factor Y, subunit B12", nuclear factor Y, subunit B12 (.1.2) AT2G38880 76 / 3e-17 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT2G37060 70 / 4e-15 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT5G47670 70 / 7e-15 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT4G14540 69 / 9e-15 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT3G53340 69 / 1e-14 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT5G47640 69 / 2e-14 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT1G21970 66 / 4e-13 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT1G09030 63 / 9e-13 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000864 [exp] 305 / 3e-107 AT5G23090 231 / 9e-79 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10027242 [exp] 300 / 1e-105 AT5G23090 267 / 3e-93 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10038952 [exp] 293 / 5e-103 AT5G23090 265 / 2e-92 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Lus10023484 [exp] 73 / 2e-16 AT2G37060 211 / 9e-71 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10003909 [exp] 74 / 4e-16 AT5G47670 221 / 1e-72 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10015058 [exp] 72 / 7e-16 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10001914 [exp] 73 / 9e-16 AT5G47670 218 / 2e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10001177 [exp] 71 / 3e-15 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10040366 [exp] 73 / 6e-15 AT3G54970 347 / 1e-115 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G052800 [exp] 265 / 1e-91 AT5G23090 250 / 1e-86 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Potri.012G058200 [exp] 254 / 2e-87 AT5G23090 239 / 5e-82 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) Potri.016G005600 [exp] 77 / 4e-17 AT5G47670 216 / 6e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.008G044800 [exp] 75 / 4e-17 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.010G216600 [exp] 74 / 1e-16 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.001G367500 [exp] 71 / 2e-15 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.006G005000 [exp] 71 / 4e-15 AT5G47670 216 / 7e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.016G085000 [exp] 70 / 4e-15 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.014G167800 [exp] 69 / 1e-14 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.016G006100 [exp] 69 / 2e-14 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10009614 pacid=23140080 polypeptide=Lus10009614 locus=Lus10009614.g ID=Lus10009614.BGIv1.0 annot-version=v1.0 ATGCCACCTCCTCCTCCTCCGCCTCAGCTTCCCAATCCGCTTGATCGCTATTCCCGACGGCCCACCAGCTCCCGCAACTCGGATCCTGACCATCCCCGAC TCGGACAGAAGAAGATGGATCCGATGGATATCGTTGGTAAAGCGAAGGAAGACGCTTCGCTTCCTAAAGCAACTATGACCAAAATCATTAAAGAGATGTT GCCTCCAGATGTTCGCGTCGCTCGTGATACTCAAGATCTTCTGATTGAATGTTGTGTAGAGTTCATAAATCTTATATCGTCGGAGTCAAACGAAGTATGT AGCAAAGAGGACAAGCGAACCATCGCACCTGAGCACGTTCTCAAAGCTCTCGAGGTTCTTGGTTTTGGAGAGTACATCGAGGAGGTATACGCAGCTTATG AGCAACACAAGCTCGAGACGATGCAAGACACTCTAAAAGTAGGGAAGTGGAGTGGGTCGGTGATGACAGAGGAGGAAGCAGCGGCCGAGCAACAGAGAAT GTTTGCTGAGGCTCGTGCAAGAATGAACGGCGGTGTCCCTTCCCCGAAGCAACCCGAGGACGACAGAAGTGTACAGAGCTAA
AA sequence Show only first row Show all	>Lus10009614 pacid=23140080 polypeptide=Lus10009614 locus=Lus10009614.g ID=Lus10009614.BGIv1.0 annot-version=v1.0 MPPPPPPPQLPNPLDRYSRRPTSSRNSDPDHPRLGQKKMDPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVC SKEDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDTLKVGKWSGSVMTEEEAAAEQQRMFAEARARMNGGVPSPKQPEDDRSVQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10009614 [exp]	0	1
AT3G62190			Chaperone DnaJ-domain superfam...		Lus10038040 [exp]	1.4	0.8160
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	1.7	0.8452
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10033214 [exp]	4.0	0.7852
AT2G25605			unknown protein		Lus10008087 [exp]	7.1	0.7990
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Lus10038046 [exp]	7.7	0.7863
AT5G23750			Remorin family protein (.1.2)		Lus10024514 [exp]	8.6	0.7397
AT5G52580			RabGAP/TBC domain-containing p...		Lus10006646 [exp]	8.8	0.7862
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	11.0	0.7389
AT2G14910			unknown protein		Lus10026601 [exp]	12.2	0.7280
AT5G06130			chaperone protein dnaJ-related...		Lus10022688 [exp]	14.1	0.7950

Compare expression of checked genes

Lus10009614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.