Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23100 249 / 1e-82 Protein of unknown function, DUF617 (.1) AT3G25640 189 / 2e-59 Protein of unknown function, DUF617 (.1) AT2G41660 160 / 1e-47 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT5G06990 144 / 1e-41 Protein of unknown function, DUF617 (.1) AT2G37880 134 / 4e-38 Protein of unknown function, DUF617 (.1) AT4G39610 132 / 2e-37 Protein of unknown function, DUF617 (.1) AT2G21990 129 / 3e-36 Protein of unknown function, DUF617 (.1) AT5G42680 122 / 1e-33 Protein of unknown function, DUF617 (.1.2) AT1G21050 119 / 2e-32 Protein of unknown function, DUF617 (.1) AT1G76610 100 / 2e-25 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000863 [exp] 412 / 3e-147 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 262 / 9e-88 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 205 / 1e-65 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 200 / 2e-63 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 174 / 5e-53 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 172 / 6e-52 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10038951 [exp] 153 / 4e-47 AT5G23100 159 / 1e-49 Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 137 / 2e-38 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 136 / 4e-38 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053000 [exp] 276 / 7e-94 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 270 / 2e-91 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 224 / 3e-73 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 192 / 7e-61 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 174 / 2e-53 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 172 / 9e-53 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 146 / 1e-42 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 144 / 8e-42 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 131 / 5e-37 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.002G002000 [exp] 128 / 6e-36 AT1G21050 236 / 1e-78 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10009615 pacid=23140082 polypeptide=Lus10009615 locus=Lus10009615.g ID=Lus10009615.BGIv1.0 annot-version=v1.0 ATGTCCAAAACTTCTCAACAACCCTTCTCCACTTCCAAGCGCCACCACCACCACTTCCGCTGGATCCAAAAAGTCGGCTCAAACGACGACGAACTCGAAA CTGATACCGAAGCGGAATCCTCAACCCCATCTCTCAAACCATCCGCCTCCAAGATCATCAGAGACGACGAAACATCACCCTCAACCAACAATCCCGCCGG AAAGAATCTGTTACCGGCCAGGCTCCGATCTGTCCTGTCCACGTTCGGCAGAAACAGAGCCTCAAACCCGTCAGGTCTAGGAAACCGGGTCGTGGGCACT CTGTTCGGGTCAAGAAAAGGTCACGTCATCCATTTTGCTTTGCAGAAGGAACCCAACTCGCCTCCAGCCTTTCTGATCGAGCTGGCTACTCCGATCGGCG GGCTGGTTAAGGAGATGGCGTCAGGGTTGGTTCGGATCGCGCTGGAGTGCGACAAACAGCGTCGGGTTGGCGGGTCCGGGTCCTCGGTGCGGCTGGGGGG GGGGGGGGGGGGGAGGGCGTACTGTAACGGGAAGAAGTGCGGGTTCGGGTCGAGGAAAGAGTGTGGTCCGAAGGAAGTGAAGCTGTTGAAAGCTGTGGAG ATGATCTCCATGGGTGCTGGTGTGATGCCACCGAGTGATGATGGTGATGATGAGGTTATGTATATGAGAGCTAAGTTCGAGAGGATTGTCGGGTCGAGAG ATTCGGAGGCTTTCTACATGATGAACCCGGATCGACATGGCGCTCCGGAGCTCAGTATCTATCTGCTTAGAGTGTGA
AA sequence Show only first row Show all	>Lus10009615 pacid=23140082 polypeptide=Lus10009615 locus=Lus10009615.g ID=Lus10009615.BGIv1.0 annot-version=v1.0 MSKTSQQPFSTSKRHHHHFRWIQKVGSNDDELETDTEAESSTPSLKPSASKIIRDDETSPSTNNPAGKNLLPARLRSVLSTFGRNRASNPSGLGNRVVGT LFGSRKGHVIHFALQKEPNSPPAFLIELATPIGGLVKEMASGLVRIALECDKQRRVGGSGSSVRLGGGGGGRAYCNGKKCGFGSRKECGPKEVKLLKAVE MISMGAGVMPPSDDGDDEVMYMRAKFERIVGSRDSEAFYMMNPDRHGAPELSIYLLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	0	1
AT1G27100			Actin cross-linking protein (....		Lus10037230 [exp]	1.4	0.9274
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10014239 [exp]	2.0	0.9320
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10009564 [exp]	3.7	0.9075
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	4.9	0.9023
AT1G17620			Late embryogenesis abundant (L...		Lus10003824 [exp]	5.5	0.8868
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	6.2	0.9174
AT2G25270			unknown protein		Lus10038102 [exp]	7.1	0.9002
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10008812 [exp]	7.3	0.9016
AT3G07870			F-box and associated interacti...		Lus10038606 [exp]	7.3	0.9095
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10020107 [exp]	9.0	0.8719

Compare expression of checked genes

Lus10009615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.