Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18600 712 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 654 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G54910 330 / 1e-103 DEA(D/H)-box RNA helicase family protein (.1) AT1G71370 288 / 7e-90 DEA(D/H)-box RNA helicase family protein (.1) AT2G40700 288 / 4e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G05450 278 / 2e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 244 / 6e-73 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT5G60990 234 / 2e-70 DEA(D/H)-box RNA helicase family protein (.1) AT5G63630 239 / 5e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08610 239 / 6e-69 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027240 [exp] 910 / 0 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 905 / 0 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008989 [exp] 691 / 0 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012172 [exp] 343 / 1e-107 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007574 [exp] 341 / 1e-106 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030523 [exp] 284 / 3e-87 AT2G40700 799 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012874 [exp] 278 / 2e-85 AT2G40700 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009838 [exp] 263 / 2e-79 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004017 [exp] 254 / 4e-76 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045300 [exp] 906 / 0 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 895 / 0 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 336 / 1e-105 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G059100 [exp] 288 / 4e-89 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G073100 [exp] 275 / 4e-84 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 247 / 4e-75 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 235 / 6e-71 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G169800 [exp] 240 / 1e-69 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 239 / 2e-69 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G013900 [exp] 215 / 3e-63 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10009616 pacid=23140051 polypeptide=Lus10009616 locus=Lus10009616.g ID=Lus10009616.BGIv1.0 annot-version=v1.0 ATGGCCGTACTAGCAGAGAACAAGCAGCCGCACGAGTCGCCGGAGGACGAGCTGAAGAAGAAGAGGAAACGAAAGGGGAGCAGAGTGAAGACATCCGCGG CGGAGGATGATGTTGAAGCTAAGCAAAATGAGGAACGGAAGCAGCAAGAGCAGCTGGAGAGCGACGATAAGGAAGAGAAGGAAGTCGTGCAGGAGCAGAA GAAAGGAAAGAAGTTGAAGTTGAAGAAGAAGAAGAAGAAGATTGAGAGGAAGGATGAGGAAGGTGATGGAGAAAAGGAGGATGCGGATAGGGATGAAGAA GAAGAAGTAGAAGATGAAGCCGAGGTGAAGGAGAAGAAAGTAAAGAGCGGCGGAGGCATTATGAGTACTGAGTCGTTTGATTCTCTAGGATTGTCCGGGC CTACTAGCAAGGCGATTCAGGCGATGGGATTTCAGTATTTGACTCAGATTCAAGCAAGGGCGATTCCGCCTCTCCTAATCGGAAAGGATGTTCTAGGTGC AGCAAGGACAGGTTCGGGGAAGACTCTTGCCTTCCTTATACCAGCTGTGGAGCTGTTGTATAATATCCATTTTGCTCCTCGTAATGGAACTGGGGTGATT GTTATTTGCCCTACCAGGGAGCTTGCTATACAGACTCATAAAGTGGCAGAAGACCTTCTCAAGTGTCATTCACAGACTCTTGGGCTTGTTATTGGCGGGG CAGCGAGGAGAGGAGAAGCTGAACGTATTGTTAAAGGGGTTAACTTGTTGGTAGCGACTCCTGGTCGGCTTCTTGATCATCTTCAAAATACTAAAGGGTT TATCTTTAAGAACTTGAAGTGCCTGATTATTGATGAGGCAGACAGGATACTGGAGGCGAACTTCGAGGAAGAAATGAAGCAGATTATCAATATTCTACCT AAGAGCAGGCAGACTGCGTTATTCTCAGCTACCCAAACTAAAACGGTAGAGGATCTTGCCCGGATGTCATTTCAGACTCCACCTATATATATTGATGTCG ATGATGGGAGAAACAAGGTCACAAATGAAGGACTCCAGCAAGGTTATACTGTAGTTCCAAGTGCCAAGAGATTTCTTCTTCTTTACTCTTTCTTGAAGAG GAATTTATCCAAGAAAGTCATGGTGTTCTTCTCGTCTTGCAATTCCGTCAAGTTCCATTCAGAACTTCTTGGATACATTCAACTACCATGTTTTGATATA CATGGAAAACAAAAGCAACAGAAGCGGACCACCACTTTTTTCGATTTCTGCAAGGCCGAGAAAGGGATTTTGCTGTGCACTGATGTTGCTGCTCGTGGAC TTGATATTCCTGCTGTGGACTGGATTGTCCAATATGATCCTCCGGATGAGCCCAAGGAATACATACATAGGGTTGGCCGAACAGCCCGTGGTGAAGGTGC GAAAGGAAATGCCTTGTTGTTCTTGATTCCGGAAGAGCTACAATTTCTACGATATCTCAAGGCAGCAAAGGTCCCGGTTAAAGAGTACGAGTTCAATGAA AATAAACTGGCAAATGTTCAGCCTCACCTGGAAAAATTGGTCGCCAACAACTATTACTTGAACAATTCGGCCAAAGATGCGTACCGGTCTTACATATTGG CTTACAATTCGCACTCCATGAAAGACATCTTCAACGTCCACCGCCTGGATCTACAGGCGGTTGCTGCTTCATTTTGCTTCTCTGGGCCTCCGAAGGTGAT CCTGAACATCGACAGCAGCGCCTCGAAATTGCGAAAGGACACCAAGAAAGGAAGCTTCAGCGATAGAAATCCCCGTGGAAGAGCAAAAGATGGAGATGAT AAACGGCTATTTGTGAGGTATTAA
AA sequence Show only first row Show all	>Lus10009616 pacid=23140051 polypeptide=Lus10009616 locus=Lus10009616.g ID=Lus10009616.BGIv1.0 annot-version=v1.0 MAVLAENKQPHESPEDELKKKRKRKGSRVKTSAAEDDVEAKQNEERKQQEQLESDDKEEKEVVQEQKKGKKLKLKKKKKKIERKDEEGDGEKEDADRDEE EEVEDEAEVKEKKVKSGGGIMSTESFDSLGLSGPTSKAIQAMGFQYLTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNIHFAPRNGTGVI VICPTRELAIQTHKVAEDLLKCHSQTLGLVIGGAARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIFKNLKCLIIDEADRILEANFEEEMKQIINILP KSRQTALFSATQTKTVEDLARMSFQTPPIYIDVDDGRNKVTNEGLQQGYTVVPSAKRFLLLYSFLKRNLSKKVMVFFSSCNSVKFHSELLGYIQLPCFDI HGKQKQQKRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELQFLRYLKAAKVPVKEYEFNE NKLANVQPHLEKLVANNYYLNNSAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSGPPKVILNIDSSASKLRKDTKKGSFSDRNPRGRAKDGDD KRLFVRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18600			P-loop containing nucleoside t...		Lus10009616 [exp]	0	1
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	1.4	0.9169
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017412 [exp]	2.2	0.9218
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	3.9	0.9139
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	6.3	0.9088
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031909 [exp]	6.3	0.9114
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	6.9	0.9019
AT1G33250			Protein of unknown function (D...		Lus10008293 [exp]	7.9	0.8998
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10042930 [exp]	8.1	0.8943
AT1G01910			P-loop containing nucleoside t...		Lus10041377 [exp]	9.2	0.8933
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	9.9	0.9054

Compare expression of checked genes

Lus10009616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.