Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74070 311 / 4e-106 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 72 / 1e-14 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G29960 66 / 7e-13 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 66 / 1e-12 ROC7 rotamase CYP 7 (.1) AT3G55920 66 / 2e-12 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 62 / 1e-11 ROC1 rotamase CYP 1 (.1) AT3G63400 58 / 3e-09 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT4G34960 56 / 7e-09 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G35100 56 / 9e-09 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT3G22920 55 / 1e-08 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008990 [exp] 542 / 0 AT1G74070 313 / 7e-107 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10018238 [exp] 69 / 1e-13 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 69 / 1e-13 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10011330 [exp] 69 / 2e-13 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10017258 [exp] 68 / 2e-13 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10003138 [exp] 69 / 6e-13 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10013552 [exp] 63 / 7e-12 AT2G16600 297 / 1e-104 rotamase CYP 3 (.1.2) Lus10007579 [exp] 63 / 9e-12 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10040007 [exp] 62 / 6e-11 AT5G35100 325 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058700 [exp] 381 / 2e-133 AT1G74070 311 / 2e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G251700 [exp] 69 / 1e-13 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.009G046500 [exp] 67 / 5e-13 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G060200 [exp] 63 / 3e-11 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.003G167700 [exp] 63 / 3e-11 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.009G130100 [exp] 61 / 3e-11 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G021500 [exp] 61 / 6e-11 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.010G189000 [exp] 61 / 9e-11 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G240200 [exp] 59 / 2e-10 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.005G215800 [exp] 60 / 6e-10 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10009619 pacid=23140105 polypeptide=Lus10009619 locus=Lus10009619.g ID=Lus10009619.BGIv1.0 annot-version=v1.0 ATGAACCTCCACCACCATCCTGCGCCCACACAACCACCACCACCTCCACAGCCGTCGAAACTGTCTCGAAGAGAGCTCACCGTTTTCGGAAACTCATCGT TGCTGCTCCTGCATTGTTTCAACCTGAACAAAGCAAGATCTGAAGACGGCACTGTCACGGATACCGGAATTCAACAGCTCTGCAGCAGCATTGGCCGAGA AGTCGTTGCTACTACAAAGAGGGCGTTTATCGATGTGTCGATCGATGGGAAGCCAGCGGGGAGGATCGTGATCGGCCTGTACGAGGACAATGTCCCCGTG GGAGCCGCAAGGTTCAGCAACCTGGTCAGTGGAGCCGCAGGGATAACATACAGGAGGAAAGAGTTCATCAAGATCACTCCGAGCTACGTCCAGCACGGAG GGGTGAGGTCTTACGGGGTGGATGCCGAGCTGGCGAGGAGCACGACGGGGAACGATTTGGGGGCCGAGACGCTGGTGGACGAGTGGGAGAGGCAGAATGA GATGTGTCCTCCCGGGACGACAAAGAACTTGGCCGGGAGTGTTGGGATTATAGTTAGGAACCCGTATAAGCCGCCACCGAAGATGAAGCTGGTGGCTAAA AAAGGGAAGCTGGAGATTGATGAAGAGGAGGTCGGTGTGAGCCCCAACGGGACAGAGTTTGTGATTGTGACGAAGGATTCGCCTGAGCTCGATGGTTCGG CTTTGGTGATTGGAAAGGTGCTTGAAGGTATGGAAGGTGCTGAGAGGATTGGACAGGGGAAGTCTGTGCAGGACAATACTAGCTCTCCTTACTTCAGAGT GGCGAAGCTAATCGGGGACAAGAGGGCAGTTGTGGCAGAGAGAGGATTCAACAGGCCATATTCAAAGGTGATCATCACAAACTGTGGTTTAATGGAATAG
AA sequence Show only first row Show all	>Lus10009619 pacid=23140105 polypeptide=Lus10009619 locus=Lus10009619.g ID=Lus10009619.BGIv1.0 annot-version=v1.0 MNLHHHPAPTQPPPPPQPSKLSRRELTVFGNSSLLLLHCFNLNKARSEDGTVTDTGIQQLCSSIGREVVATTKRAFIDVSIDGKPAGRIVIGLYEDNVPV GAARFSNLVSGAAGITYRRKEFIKITPSYVQHGGVRSYGVDAELARSTTGNDLGAETLVDEWERQNEMCPPGTTKNLAGSVGIIVRNPYKPPPKMKLVAK KGKLEIDEEEVGVSPNGTEFVIVTKDSPELDGSALVIGKVLEGMEGAERIGQGKSVQDNTSSPYFRVAKLIGDKRAVVAERGFNRPYSKVIITNCGLME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74070			Cyclophilin-like peptidyl-prol...		Lus10009619 [exp]	0	1
AT4G02530			chloroplast thylakoid lumen pr...		Lus10030109 [exp]	3.3	0.9337
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10042346 [exp]	6.0	0.9224
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10029979 [exp]	6.3	0.9268
AT2G36145			unknown protein		Lus10022687 [exp]	9.8	0.9151
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10030326 [exp]	10.5	0.9145
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	11.5	0.8991
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	18.0	0.9068
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010770 [exp]	19.5	0.8287
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10026086 [exp]	19.8	0.8981
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	20.1	0.8851

Compare expression of checked genes

Lus10009619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.