Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21920 154 / 2e-46 ATYLMG2 YGGT family protein (.1.2) AT4G27990 72 / 4e-15 ATYLMG1-2 YGGT family protein (.1) AT3G07430 72 / 5e-15 ATYLMG1-1, EMB1990 embryo defective 1990, YGGT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008993 [exp] 343 / 5e-121 AT5G21920 186 / 1e-58 YGGT family protein (.1.2) Lus10009586 [exp] 69 / 7e-14 AT4G27990 204 / 2e-66 YGGT family protein (.1) Lus10020405 [exp] 69 / 8e-14 AT4G27990 199 / 1e-64 YGGT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G220400 [exp] 196 / 1e-62 AT5G21920 222 / 1e-72 YGGT family protein (.1.2) Potri.002G250200 [exp] 72 / 5e-15 AT4G27990 210 / 2e-68 YGGT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02325 [flax] [poplar] YGGT YGGT family
Representative CDS sequence Show only first row Show all	>Lus10009622 pacid=23140066 polypeptide=Lus10009622 locus=Lus10009622.g ID=Lus10009622.BGIv1.0 annot-version=v1.0 ATGATGTCGCCGGCGGAGCAGAGCCCACCGGAGAAATCTAACTGGTGTTGGTCTCCCATGGCGTTGCTACTTCCATCACCTCACCCACTCCACAGACCTA CCTTAAGGAAACCAGAGCTCCACAAGTGCGTCGAAAACTTCTCCAGATTCCTACAGCAACTACTACTCACCTCGCAAAACCCCATTCTCAAGACCTTCGT TCAACTCTCTTCACCGCCGCCTCCCCATCCTCCGCGTGAATTCAAAATGGCAAGCTCGGCAAACTTCGCGGCGATTTTGCCTGGGGATTCAGTGGCCGGA GTTGTGGTGGCTAACGGAGTACTCAATTTCCTCAACATTTACAACACCTTACTCGTTGTACGCCTTGTCCTCACCTGGTTTCCCAACTCTCCTCCTGCAA TCGTCTCTCCTCTCAGCACGTTATGTGATCCATACCTTAACATATTCCGTGGAATCATACCGCCTCTGGGAGGGACGCTGGATTTGTCACCAATCCTGGC ATTCCTGGTTCTGAATGCCTTTACCAGTACAGCTTCTGCTATTCCTGCTGAACTTCCAGGTGAAGCAATCATAGGTTCTTCTTCTCCTCCTGCCATTCGT AATCGTAGATCTCCTACTTGGTTCGATGGTCTGACCACATCACAAAGGAAATGGTTGTCCAGGCTACAAAGTGACAAGAAGTCTACTAAGTGA
AA sequence Show only first row Show all	>Lus10009622 pacid=23140066 polypeptide=Lus10009622 locus=Lus10009622.g ID=Lus10009622.BGIv1.0 annot-version=v1.0 MMSPAEQSPPEKSNWCWSPMALLLPSPHPLHRPTLRKPELHKCVENFSRFLQQLLLTSQNPILKTFVQLSSPPPPHPPREFKMASSANFAAILPGDSVAG VVVANGVLNFLNIYNTLLVVRLVLTWFPNSPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAFTSTASAIPAELPGEAIIGSSSPPAIR NRRSPTWFDGLTTSQRKWLSRLQSDKKSTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Lus10009622 [exp]	0	1
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10032862 [exp]	1.4	0.9231
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10033424 [exp]	12.4	0.9117
AT4G17560			Ribosomal protein L19 family p...		Lus10023720 [exp]	13.0	0.9101
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Lus10008993 [exp]	14.4	0.8940
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10012538 [exp]	15.2	0.9160
AT1G28150			unknown protein		Lus10012907 [exp]	15.7	0.8757
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10030544 [exp]	21.6	0.8996
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Lus10001115 [exp]	21.8	0.8705
AT5G65220			Ribosomal L29 family protein ...		Lus10019653 [exp]	23.0	0.9099
AT3G15900			unknown protein		Lus10023126 [exp]	24.0	0.8891

Compare expression of checked genes

Lus10009622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.