Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38840 117 / 1e-35 SAUR-like auxin-responsive protein family (.1) AT2G21200 114 / 1e-34 SAUR-like auxin-responsive protein family (.1) AT5G18050 113 / 2e-34 SAUR-like auxin-responsive protein family (.1) AT5G18020 112 / 6e-34 SAUR-like auxin-responsive protein family (.1) AT5G18030 112 / 8e-34 SAUR-like auxin-responsive protein family (.1) AT5G18080 112 / 1e-33 SAUR24 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) AT5G18060 111 / 2e-33 SAUR-like auxin-responsive protein family (.1) AT5G18010 109 / 1e-32 SAUR19, SAUR24 small auxin up RNA 19, SAUR-like auxin-responsive protein family (.1) AT4G38825 106 / 1e-31 SAUR-like auxin-responsive protein family (.1) AT3G03840 103 / 2e-30 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009628 [exp] 174 / 3e-58 AT4G38840 123 / 3e-38 SAUR-like auxin-responsive protein family (.1) Lus10009001 [exp] 163 / 8e-54 AT4G38840 122 / 9e-38 SAUR-like auxin-responsive protein family (.1) Lus10038193 [exp] 152 / 9e-50 AT4G38840 121 / 3e-37 SAUR-like auxin-responsive protein family (.1) Lus10027317 [exp] 146 / 4e-47 AT5G18030 119 / 1e-36 SAUR-like auxin-responsive protein family (.1) Lus10009624 [exp] 145 / 7e-47 AT4G38840 119 / 9e-37 SAUR-like auxin-responsive protein family (.1) Lus10038191 [exp] 145 / 1e-46 AT4G38840 116 / 2e-35 SAUR-like auxin-responsive protein family (.1) Lus10039020 [exp] 144 / 1e-46 AT5G18020 118 / 2e-36 SAUR-like auxin-responsive protein family (.1) Lus10008994 [exp] 146 / 2e-46 AT5G18050 113 / 2e-33 SAUR-like auxin-responsive protein family (.1) Lus10008991 [exp] 144 / 2e-46 AT4G38840 115 / 4e-35 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G126700 [exp] 139 / 3e-44 AT4G38840 126 / 3e-39 SAUR-like auxin-responsive protein family (.1) Potri.009G126500 [exp] 130 / 7e-41 AT5G18020 124 / 1e-38 SAUR-like auxin-responsive protein family (.1) Potri.009G126300 [exp] 127 / 1e-39 AT5G18060 123 / 2e-38 SAUR-like auxin-responsive protein family (.1) Potri.004G165200 [exp] 122 / 1e-37 AT5G18020 122 / 6e-38 SAUR-like auxin-responsive protein family (.1) Potri.004G164800 [exp] 120 / 5e-37 AT4G38840 120 / 3e-37 SAUR-like auxin-responsive protein family (.1) Potri.004G164600 [exp] 118 / 5e-36 AT4G38840 115 / 5e-35 SAUR-like auxin-responsive protein family (.1) Potri.009G126400 [exp] 115 / 3e-35 AT5G18020 119 / 1e-36 SAUR-like auxin-responsive protein family (.1) Potri.009G126900 [exp] 111 / 1e-33 AT4G38840 131 / 1e-41 SAUR-like auxin-responsive protein family (.1) Potri.004G164700 [exp] 109 / 8e-33 AT5G18020 122 / 8e-38 SAUR-like auxin-responsive protein family (.1) Potri.004G165450 [exp] 109 / 1e-32 AT4G38840 129 / 2e-40 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10009623 pacid=23140037 polypeptide=Lus10009623 locus=Lus10009623.g ID=Lus10009623.BGIv1.0 annot-version=v1.0 ATGGCTATTGGATTGCCTGGTAATCTTGCTAAGCAGATTCTCAGAAGATCAGGTTCCGGTTCGAAGAAAGCATCTTCGAGGTTTGCAGATGTGCCAAAGG GTTACTTAGCAGTTTATGTTGGAGAGACACAGAAGAAGAGATTTCTAGTGCCAGTTTCGTGTCTGAGTCAGCCCTCGTTTCAAGACTTGCTGAGCATGGC TGAAGACGAGTTCGGGTTTGATCATCCGATGGGTGGATTGACCATTCCTTGCAGTGAAGAAACCTTTATTTCTGCCACTTCAAACTTGAGCAGGCCATGA
AA sequence Show only first row Show all	>Lus10009623 pacid=23140037 polypeptide=Lus10009623 locus=Lus10009623.g ID=Lus10009623.BGIv1.0 annot-version=v1.0 MAIGLPGNLAKQILRRSGSGSKKASSRFADVPKGYLAVYVGETQKKRFLVPVSCLSQPSFQDLLSMAEDEFGFDHPMGGLTIPCSEETFISATSNLSRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009623 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009628 [exp]	1.4	0.9872
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009001 [exp]	2.0	0.9863
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009486 [exp]	3.0	0.9705
					Lus10019921 [exp]	3.7	0.9136
AT4G02630			Protein kinase superfamily pro...		Lus10012664 [exp]	6.6	0.8784
AT5G44680			DNA glycosylase superfamily pr...		Lus10036248 [exp]	7.4	0.9249
AT1G32780			GroES-like zinc-binding dehydr...		Lus10033241 [exp]	7.5	0.9284
					Lus10025831 [exp]	8.0	0.8593
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008991 [exp]	8.0	0.9483
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	8.8	0.9359

Compare expression of checked genes

Lus10009623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.