Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08400 408 / 1e-144 Protein of unknown function (DUF3531) (.1), Protein of unknown function (DUF3531) (.2) AT4G29400 188 / 3e-58 Protein of unknown function (DUF3531) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032701 [exp] 176 / 2e-53 AT4G29400 307 / 1e-104 Protein of unknown function (DUF3531) (.1) Lus10008997 [exp] 128 / 1e-37 AT5G08400 111 / 3e-31 Protein of unknown function (DUF3531) (.1), Protein of unknown function (DUF3531) (.2) Lus10012917 [exp] 42 / 3e-05 AT4G29400 91 / 1e-23 Protein of unknown function (DUF3531) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G255300 [exp] 410 / 2e-145 AT5G08400 438 / 4e-156 Protein of unknown function (DUF3531) (.1), Protein of unknown function (DUF3531) (.2) Potri.014G148300 [exp] 184 / 8e-57 AT4G29400 337 / 1e-116 Protein of unknown function (DUF3531) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12049 [flax] [poplar] DUF3531 Protein of unknown function (DUF3531)
Representative CDS sequence Show only first row Show all	>Lus10009625 pacid=23140030 polypeptide=Lus10009625 locus=Lus10009625.g ID=Lus10009625.BGIv1.0 annot-version=v1.0 ATGGGGTTGGTAGCAGACATGGGGTTTAGATTCTGGCAAAGTAGTCGACCAAGTAATCTGCAGCATTCAGTACTAAGAACCCATCCTCCTCCAAATCTCC TACTTGCATTTGCACTTCCATCATCCTCTGAATCTGCTGATCCTGTGGTGTCCGGCACCACCGCTCGAGGACGGCGGCTGCTCAAAATTCGGGAAGAGAA GAATAAACGCGATTGGGATCGCTTGCATAAATACCCTTCTTGGGCCAAAGTTCTTGAGAACGCTTGCAAAGACGACGAGGAACTCCGAAGTATCCTCGGG GATAGCATAGGTAACCCTGAGCTCATGAGGAAACGGGTGGAGGACAGAATCAGGAGGAAAGGTCGAGACTTTAGGAAGTCGAAAACTGGTTCCATTCTCG CTTTCAAAGTTAGCTTTAGAGACTTCAACTCCATTGATTCCTACATATGGTTTGAATTCCTGGGATCCCCTTCTGATCGGGATGTTGCGCTCTTCGGTGG CGTTATTCAATCCTGGTATGTCATGGGCCGCTTGGGTTGTTTCAACTCTTCAAATCTGCAGTTGGGAAGTTCTTCAATGGAGTATGATCCGCTCTATGAT TCAGAGAAAGCATCCCAGGCAATGCCGTCATCATTCCACGACATTGGAGATGTTGAGTTTCAGGACAACTGGGGCCGTGTCTGGGTAGACCTTGGTACAT GTGATTTCTTTGCCATTGATGTGTTGTTGAACTGCTTGACCGTATTGAGTTCAGAGCATTTGGGGATTAAACAAGTTGTGTTCGGGGGCCGCAAATTGGG AGACTGGGAAGAGGGGATGACGAACCCCGAGTATGGTTACAAGAACTTCAAGATATAA
AA sequence Show only first row Show all	>Lus10009625 pacid=23140030 polypeptide=Lus10009625 locus=Lus10009625.g ID=Lus10009625.BGIv1.0 annot-version=v1.0 MGLVADMGFRFWQSSRPSNLQHSVLRTHPPPNLLLAFALPSSSESADPVVSGTTARGRRLLKIREEKNKRDWDRLHKYPSWAKVLENACKDDEELRSILG DSIGNPELMRKRVEDRIRRKGRDFRKSKTGSILAFKVSFRDFNSIDSYIWFEFLGSPSDRDVALFGGVIQSWYVMGRLGCFNSSNLQLGSSSMEYDPLYD SEKASQAMPSSFHDIGDVEFQDNWGRVWVDLGTCDFFAIDVLLNCLTVLSSEHLGIKQVVFGGRKLGDWEEGMTNPEYGYKNFKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08400			Protein of unknown function (D...		Lus10009625 [exp]	0	1
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10004466 [exp]	1.7	0.8724
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013857 [exp]	3.5	0.8288
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	8.8	0.8231
AT2G32580			Protein of unknown function (D...		Lus10035349 [exp]	9.2	0.8237
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10010635 [exp]	12.2	0.8170
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Lus10006936 [exp]	15.8	0.8271
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10021337 [exp]	16.5	0.8223
AT3G27100			unknown protein		Lus10012534 [exp]	19.0	0.8013
AT5G06440			unknown protein		Lus10021251 [exp]	25.7	0.7729
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10005443 [exp]	26.0	0.7715

Compare expression of checked genes

Lus10009625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.