Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71210 636 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 162 / 8e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 159 / 3e-40 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 152 / 3e-38 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G30290 146 / 1e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 142 / 6e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 140 / 2e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 139 / 6e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 139 / 1e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64100 139 / 2e-33 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008998 [exp] 1766 / 0 AT1G71210 645 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 164 / 2e-41 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 161 / 1e-40 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005303 [exp] 159 / 5e-40 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 155 / 1e-38 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 151 / 3e-37 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 142 / 6e-35 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10031565 [exp] 142 / 7e-35 AT1G09900 335 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027916 [exp] 141 / 2e-34 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229100 [exp] 835 / 0 AT1G71210 618 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G000601 [exp] 199 / 8e-58 AT1G71210 147 / 4e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G000701 [exp] 152 / 8e-43 AT1G71210 134 / 3e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 159 / 5e-40 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 157 / 7e-40 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 155 / 5e-39 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 152 / 3e-38 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G019200 [exp] 147 / 6e-37 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 149 / 1e-36 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 145 / 5e-36 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009626 pacid=23140021 polypeptide=Lus10009626 locus=Lus10009626.g ID=Lus10009626.BGIv1.0 annot-version=v1.0 ATGCTCTCAATCAAGCAATCTCAGAGCTTGCTTCGATCTCATCTCAAATCTTATTGCATCTCTTCGTTCTCTCATGGCAGAGTTTCCAGCTCGACTCACC ACCAACTTCATCATCCCTGCTTGTTCTTCGGATATTTCACCTCTGTATCCTACCACTCGCCGTTTTCGTCGGCGGCGGCAGAGGCGGTAGCTGGCCCCGG TTTGTTCGGTTCCACCACCATCACTGCTACAGAGGTAGCATCAACCTTCAAGGAATGGTTCAAGAGCGGAAACGACGCCGTTCTGGATCGAGTTTTCCAG CTTCTCATTGGGCAAGGTAAGGAAGATGAAGCAGCTCTGGTTTTCTCCCAATTAGGTCTTCGGTTGTCGGAGTCGGTAGTTATAAAAGTGCTCGATTACG GCAGGTCAAAGTACGACGTCTTGTCCTGTATCAAGTTCTTCGACTGGGCTGGTCATCAGCATGGCTTCCACCACACTCGTGCAACTTACCATTCCCTTTT CAAGATCCTATCGAAGTCCAGGAACATGTCCACCATGTTCGATTTCCTCGGCATTTACAGCAGGGACAAGCTGTTCCTACAGCAGACTGCTTTCCAGTCG ATTCTGGTGATGGGGTATGCTGTAGCGGGTAAGCCCCACATTGCACTCCAAGTGTTCGGTAAAATGCGTTTTCAAGGACTGGACTTGGATGCATTTACAT ACCACCTTCTTCTCAATTCCTTAGTTGAGGAGGGCGATAGTTTTGATGCTGTTGATGTTATTGCCAAGCAGATTTCGGCCAGGGGTTTTGAGAGAGATGT CACCCATACGATAGTAGTGAAGAACTTGTGCAGGCAGAACATGCTTGATGATGCTGAAGCTTACTTGCGGGAGATGCTTCTGGTTGATGATGGGCATGCT GTGAGTGTTCTTGTGGATGCCCTTTGCCGAGTAGGTCGGTTTGACAAGGCAGGGAAGTTACTAGAGGAGTTCAAGGAGCTTGGGGTTATGCCAATGGAGC CGGCATATGGTGTTTGGCTTAAACACCTTGTCCATGCTGGTAAGGTCGACGGAGCTCTCGAGTTCTTGCAGAGTAAGAAGTCATTAGAAGGGTATGTCCC TGAGATTTTTCGGTATAACTATCTGTTGGATAGACTGTTGAAGGAGAACCGACTTGGGGATGCTTATGATTTGCTTACGGAAATGAGGGAGAGTGGGATT ACACCGGATAGGTGTACTATGAACGCTGCATTATGCTTCTTCTGCAAAGCCGGAATGGTTAGTGTTGCTCTTGAATTGTATAACTCCAGGTCAGATCTTG CATTTTCGCCTAATACCATGGCCTATAACTATCTTATCAATTCCCTGTGCGGGGATGGCAGTGTGGATGATGCATATCATGTACTAAAGAATTGGACACA GCAGCATGGTTCTGCTCCTCCTGGGAGGCAAACGTTTTATATACTTGCCGACACTTTATCTAGGGAAGGTAAACTTGATAAAATGAAAGACCTCGTTCTC ATGGCTTTGGAACGGAATTTTACACCAAGTATATGCGAGAAGTTTATATCCGCTATGTGTCGGGCTGAGAGGGTGGAGGATGGTTATTTGATACACGGGG AACTTAACAGGATGAACAAAATCGTTAAGGAAAGTACATACTCAAAGTTAATTCGTGGGTTTAGTAGATCGGATAGACCAGATATTGCAGCAAGGCTTCT GATTGAAATGCAAGAGAAGGGGCATAGACCCAATAAGAATCTATTTAAAAGTGTCATTTGCTGTTTATGCTATTCGGAGAATGCAGATAAACAAGTCCTA AAGCTGCTCGAGATGCAGTTATCACTTCATAAACATAACTGTCATATTTATAACATATTCATTGATGGAGTAGGGACTGGAAAGAGGCCTGACCTAGCCA GAGAAGTATTTGAGATGATGGTGAGAAATGGGATTGAGCCTAATCTTGAATGCGACACCCTTTTACTGAGGAGCTATCTACGGAATGATAGGGTAGCTGA TGCTGTAGGTTTCTTTGATGCTTTATGTCAAAGAAGAAAGTTTAGAAAGAGGTTGTACTGCACCATGGTTATTAATCTGGCTAAGTTGGATAAAGTGAAT CTTGCATTGCATTATATGAATGAAATGCGGAAATCCAATGAACTGCAGCCTAGTGGAATCATCCCTAGCATTGAATGCTACGAGGTTCTTATACTGAAGC TCTCTGAGTTTGGAATGTATGACTTGGCAGTGAAACTTATATATGACTTCGAAAAACTAGGACGTCGTGTCACGTCTTTCATGGGTAATGTGCTTTTGTA TCATTCCCTGAAAGGTAGAGAGCTCCATCAGGCTTGGGATAGATTTAGATTGATGGAGGTGCAAGATGAGAGTGAGGCATCAAAGAAGCTTTCACTATTT TGCCACCTGGTTGGTGCATTCTCTGGCTGTGTTAGCATAAGCGAGGAAATTGATGACTTGGAAGAATTGATTGCACAATGCTTCCCCTTAAATATTTACA CTTTTAATCTGTTATTGAGAAGGCTATGCATGCTGGATGTGGAGAAAGGCTGTGAGTTCTTTGCTAAGATGCACCGGGGAGGCTATGAACCGAATCGATG GACTTATGACATCATGGTGCATGGTTTTCTTAGGCAAGGAAAGACGCAGGAAGCTAGAATGTGGATGGCTGAGATGTTTCAACAAGGGTTTGATCTGACT GAGAGTACCTCGAGATACTTAACAAGAATGGGCGCCAAAACATTTATAGCTGAAAACAATAATAACCAGGCAACGGTCAGAGGTTGA
AA sequence Show only first row Show all	>Lus10009626 pacid=23140021 polypeptide=Lus10009626 locus=Lus10009626.g ID=Lus10009626.BGIv1.0 annot-version=v1.0 MLSIKQSQSLLRSHLKSYCISSFSHGRVSSSTHHQLHHPCLFFGYFTSVSYHSPFSSAAAEAVAGPGLFGSTTITATEVASTFKEWFKSGNDAVLDRVFQ LLIGQGKEDEAALVFSQLGLRLSESVVIKVLDYGRSKYDVLSCIKFFDWAGHQHGFHHTRATYHSLFKILSKSRNMSTMFDFLGIYSRDKLFLQQTAFQS ILVMGYAVAGKPHIALQVFGKMRFQGLDLDAFTYHLLLNSLVEEGDSFDAVDVIAKQISARGFERDVTHTIVVKNLCRQNMLDDAEAYLREMLLVDDGHA VSVLVDALCRVGRFDKAGKLLEEFKELGVMPMEPAYGVWLKHLVHAGKVDGALEFLQSKKSLEGYVPEIFRYNYLLDRLLKENRLGDAYDLLTEMRESGI TPDRCTMNAALCFFCKAGMVSVALELYNSRSDLAFSPNTMAYNYLINSLCGDGSVDDAYHVLKNWTQQHGSAPPGRQTFYILADTLSREGKLDKMKDLVL MALERNFTPSICEKFISAMCRAERVEDGYLIHGELNRMNKIVKESTYSKLIRGFSRSDRPDIAARLLIEMQEKGHRPNKNLFKSVICCLCYSENADKQVL KLLEMQLSLHKHNCHIYNIFIDGVGTGKRPDLAREVFEMMVRNGIEPNLECDTLLLRSYLRNDRVADAVGFFDALCQRRKFRKRLYCTMVINLAKLDKVN LALHYMNEMRKSNELQPSGIIPSIECYEVLILKLSEFGMYDLAVKLIYDFEKLGRRVTSFMGNVLLYHSLKGRELHQAWDRFRLMEVQDESEASKKLSLF CHLVGAFSGCVSISEEIDDLEELIAQCFPLNIYTFNLLLRRLCMLDVEKGCEFFAKMHRGGYEPNRWTYDIMVHGFLRQGKTQEARMWMAEMFQQGFDLT ESTSRYLTRMGAKTFIAENNNNQATVRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10009626 [exp]	0	1
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	1.0	0.9353
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	6.5	0.8982
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10026424 [exp]	6.9	0.9164
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	12.3	0.9246
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	14.7	0.8832
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001585 [exp]	16.1	0.9085
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10040367 [exp]	16.5	0.9069
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10004570 [exp]	18.3	0.9045
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	18.7	0.9070
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	19.6	0.9149

Compare expression of checked genes

Lus10009626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.