Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02475 235 / 4e-78 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G01883 197 / 3e-63 Polyketide cyclase / dehydrase and lipid transport protein (.1) AT1G02470 183 / 1e-57 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009002 [exp] 326 / 5e-114 AT1G02475 253 / 5e-86 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G190300 [exp] 237 / 9e-79 AT1G02475 241 / 6e-81 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.014G115400 [exp] 236 / 2e-78 AT1G02475 217 / 1e-71 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF03364 [flax] [poplar] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10009629 pacid=23140065 polypeptide=Lus10009629 locus=Lus10009629.g ID=Lus10009629.BGIv1.0 annot-version=v1.0 ATGTCGGCAGCCTTAATCTCAAGCTACTCAACCCCATATCCTACCCTCCATCTAATCAACCCTTCTCTCAAATCGATCGCCGCTTGCAGCACCTCAACGA CGACGACGCTAAAGCCTCCTCCGACCTTCAGCTGGGTTCATCACCAAAGAAAATGCTCGTCGTCGTCTCGGCCTTCTAAGTTGCTATCCAAATCGTATTC TCCTCCAGTCATGCAGTGGCAGGATTGCACAGTGAAGAAGGAGATTGATGTGCCGGTTTCCGTTGCTTACAACTGCTATCTGGATCGTGAATCGATTCCG AAATGGATGCCCTTCATCTCCTCTGTTCAGATACTTGAAGACAAGCCAGACTTATCACGGTGGTCGTTAAAATACGAAGCGTTCGGTCAAGATATCGAAT TCTCATGGCTTGCTCGAAATATGCAGCCTACTCCAAATCAGAAGATTCATTGGAGATCCCTAGATGGCCTTCCCAACAGGGGTGCTGTTCGATTCTTCCC GAAAGGGGCCACCTCCTGTACAGTAGAACTGACAGTATCATACGAAGTTCCTCCCATTTTGAGTCCAGTTGCATCAGTAAGCAAGCAGCCCTTTTCCAAA CCGTATTCGAATCAGATAGGAAACCAAAACGAACCCACCCTTCCGTTCGATTCTGATGATTGGTTTCTGTGTTTCCAGGCACTGCAACCATTCCTTGAGA ACCTTCTCAGCCGTGGACTGGACAGATTTGCAACGTTCGCCAAAAGCTACTGA
AA sequence Show only first row Show all	>Lus10009629 pacid=23140065 polypeptide=Lus10009629 locus=Lus10009629.g ID=Lus10009629.BGIv1.0 annot-version=v1.0 MSAALISSYSTPYPTLHLINPSLKSIAACSTSTTTTLKPPPTFSWVHHQRKCSSSSRPSKLLSKSYSPPVMQWQDCTVKKEIDVPVSVAYNCYLDRESIP KWMPFISSVQILEDKPDLSRWSLKYEAFGQDIEFSWLARNMQPTPNQKIHWRSLDGLPNRGAVRFFPKGATSCTVELTVSYEVPPILSPVASVSKQPFSK PYSNQIGNQNEPTLPFDSDDWFLCFQALQPFLENLLSRGLDRFATFAKSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02475			Polyketide cyclase/dehydrase a...		Lus10009629 [exp]	0	1
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10024330 [exp]	15.1	0.8211
AT2G32040			Major facilitator superfamily ...		Lus10006106 [exp]	26.5	0.8013
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10015143 [exp]	56.0	0.7787
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10041490 [exp]	63.5	0.7720
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Lus10001115 [exp]	86.3	0.7656
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	86.7	0.7665
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10014028 [exp]	101.8	0.7258
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10008555 [exp]	140.1	0.7374
AT1G29530			unknown protein		Lus10011974 [exp]	140.4	0.6979
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10036204 [exp]	142.5	0.7296

Compare expression of checked genes

Lus10009629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.