Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70740 332 / 4e-111 Protein kinase superfamily protein (.1.2) AT4G21390 344 / 8e-111 B120 S-locus lectin protein kinase family protein (.1) AT4G21410 338 / 4e-110 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23180 336 / 2e-109 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G61610 338 / 9e-109 S-locus lectin protein kinase family protein (.1) AT4G23140 334 / 1e-108 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23230 321 / 1e-105 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G11530 325 / 2e-105 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT3G45860 324 / 8e-105 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23130 323 / 1e-104 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038940 [exp] 515 / 0 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10027230 [exp] 400 / 2e-138 AT4G21390 278 / 2e-90 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 351 / 1e-112 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007632 [exp] 338 / 5e-110 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 337 / 5e-110 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018379 [exp] 332 / 7e-108 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007600 [exp] 348 / 1e-107 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10020083 [exp] 318 / 8e-106 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10007633 [exp] 326 / 1e-105 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G055500 [exp] 553 / 0 AT4G23180 364 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G037300 [exp] 358 / 2e-116 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 352 / 8e-114 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G024632 [exp] 336 / 3e-113 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 345 / 9e-113 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G026350 [exp] 344 / 1e-112 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025200 [exp] 340 / 3e-111 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 339 / 1e-110 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.010G109700 [exp] 330 / 1e-110 AT1G70740 523 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G028300 [exp] 342 / 4e-110 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10009631 pacid=23140034 polypeptide=Lus10009631 locus=Lus10009631.g ID=Lus10009631.BGIv1.0 annot-version=v1.0 ATGGGCATTGTCTGCACCATATGCCGGTTTATTGGCGGCAAGCTCAGCTCTTCCTCCTGTGGTGGCGCCAAGGCGGATGGTGACGATGCCGCCGAAACTT CCGACCTGTTCTTCCCTCTCCGTACGCTTCAAATCGCCACCAACTTCTTCTCCGACTTGAACGAGCTCGGCCATGGTGGGTTCGGCCCCGTCTTCAAGGG TTTGATTCCGAATGGCCAAGAGATCGCGGTGAAGAAGCTGTCGTTGAACTCGAGACAAGGAGTACGAGAGTTCACGAACGAGGTGAAGCTTCTCTTGAGA ATCCAGCACAAGAACTTAGTCACGTTGCTGGGTTGCTGCGTAGAAGGGCCTGAGAAGATGCTTGTTTATGAGTACCTTCCCAACAAAAGCCTGGACTACT TCCTCTTCGATAAACGAAAATCTCCTTCCTTGGAATGGACAACGCGATTCCAGATAGTCACAGGAGTGGCGAGGGGGATTCTGTACCTCCACGAAGAAGC ACCGATGAGAATCCTTCACCGAGACATCAAGGCGAGCAACATACTTCTGGACGAAGCACTGAATGCAAAGATATCGGATTTTGGCCTTGCTAGGCTGTTC CCGGAGGATGACACTCATGTAAACACATTCAGGATATCTGGTACTCATGGCTACATGGCTCCGGAGTATGCGATGCACGGATACCTTTCTGTCAAGACCG ATGTGTTCAGTTATGGTATCCTCGTTCTGGAGATCGTAAGTGGGAGGAAGAACCTCGATCGAAGACTTGGCCAGGATCATGCTGATATCTTGAATTCTGC ATGGATACTCTACCAAGCAGAAAAGACAATGGAACTACTAGACCCGAGCCTGGCCAGCTACAATCGCGACGAAGTGGAGATGTGCATCCAACTAGGGCTC CTCTGCTGCCAGCAGACGGTAGCTCATCGGCCAGACATGAACGCGGTTAATCTGATGCTTTCGAGTGACTCTTTCAGCTTGCCTGCACCGGGTAAACCTG GAACACAAGGTAGGGCAGCTGGAAGGTGGACATCTACTGGTACTGGTGATGATGGGACCACTTCTGCCTTGACCTCCACGAACCCGACTACTAATACTAC TACTACTACAACGACTAAGTTGGGTTTCACCAAGGGCTCCGGCGGAGGAGGGGTTAGTTCTGTTGACGATTACTCCAGGAACTCCATTTCTGTTTCCTCC ATTAATGAAGGTAGATAA
AA sequence Show only first row Show all	>Lus10009631 pacid=23140034 polypeptide=Lus10009631 locus=Lus10009631.g ID=Lus10009631.BGIv1.0 annot-version=v1.0 MGIVCTICRFIGGKLSSSSCGGAKADGDDAAETSDLFFPLRTLQIATNFFSDLNELGHGGFGPVFKGLIPNGQEIAVKKLSLNSRQGVREFTNEVKLLLR IQHKNLVTLLGCCVEGPEKMLVYEYLPNKSLDYFLFDKRKSPSLEWTTRFQIVTGVARGILYLHEEAPMRILHRDIKASNILLDEALNAKISDFGLARLF PEDDTHVNTFRISGTHGYMAPEYAMHGYLSVKTDVFSYGILVLEIVSGRKNLDRRLGQDHADILNSAWILYQAEKTMELLDPSLASYNRDEVEMCIQLGL LCCQQTVAHRPDMNAVNLMLSSDSFSLPAPGKPGTQGRAAGRWTSTGTGDDGTTSALTSTNPTTNTTTTTTTKLGFTKGSGGGGVSSVDDYSRNSISVSS INEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10009631 [exp]	0	1
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	3.0	0.7952
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10013201 [exp]	3.2	0.7992
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10030296 [exp]	4.0	0.7791
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021104 [exp]	4.5	0.8084
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10004714 [exp]	7.0	0.7713
AT1G03080			kinase interacting (KIP1-like)...		Lus10006896 [exp]	9.5	0.7758
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10029534 [exp]	9.7	0.7543
AT2G42760			unknown protein		Lus10007299 [exp]	11.6	0.7658
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10018323 [exp]	14.1	0.7649
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10003389 [exp]	20.8	0.7305

Compare expression of checked genes

Lus10009631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.