Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48780 55 / 1e-08 unknown protein AT3G18300 49 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009004 [exp] 355 / 1e-123 AT1G48780 98 / 7e-24 unknown protein Lus10041430 [exp] 49 / 2e-06 AT1G68330 111 / 4e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045700 [exp] 94 / 1e-22 AT1G48780 107 / 8e-28 unknown protein Potri.012G055300 [exp] 90 / 5e-21 AT1G48780 105 / 2e-27 unknown protein Potri.008G122300 [exp] 72 / 2e-14 AT1G68330 134 / 6e-38 unknown protein Potri.017G115700 [exp] 68 / 4e-13 AT1G67050 112 / 6e-30 unknown protein Potri.010G122800 [exp] 61 / 1e-10 AT1G68330 136 / 7e-39 unknown protein Potri.004G098700 [exp] 51 / 2e-07 AT1G67050 117 / 6e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009633 pacid=23140075 polypeptide=Lus10009633 locus=Lus10009633.g ID=Lus10009633.BGIv1.0 annot-version=v1.0 ATGTGTACAGAGACGGAGCCACGTTTCTCCTTCTCCAGAGATCTCTCCGACCACGGCGATGAATCCCATACGCCGGCGGCGGATTCGGACCAGCATCAGT GCAGAAGAGATGCAGACCTCCTCCGTTATTCTTCTCCCGCCGCCGATCCTCACACCACCTCCGATCATCCTTTCGAATTCAGGATTGATTCGAGAAATGG CCACTACCCCTCCTCCTCTGCCGACGAGCTCTTCGCCGGCGGCATCATCCTCCCCTTCCACCTTCTCCACCGTGAAACGGTCATCTCAACCTCCTCCTCT TTCGTCTCCGCCACTCACAGACGAACGCAGAGCTTTGACCAGCTCAACCTCCTCCCTCCGCCGCCTCCCCAGCTGAAGAAATCCCCGGCAATTTCAGCTG CTACTCCTCCACCTGAAACCGCCGAGGATCAACCGTCTAAGCCGTCGTCCAAATCATTTTGGGGCTTCAAGAGAAGCACGAGTCTTAGCAACTGCGACCT GAAGAAAACCCTGATATCTTCCCTCCCGCCACTTCTCTCCCGGAGCAAATCCACTGGATCGGTCCCCGTTCCCAAGAATCCATCTCATAAAAACGAAATC CACCACCACCACAAGCCGGTCCCCCACAGTTACTCGGCAAAATCATCCTCATCTTCGTCATCTAATTATGCGTACTCGTTTCCCCAAAAACCGCCTCTGA AGAAGAAGAACTCATACGGCGGAGGCGGAGGAGGAGGATTTTCTTCTTCGTCTTATGGTCATAATCAGTATATGAACGGGACGGCAAGGATTAGCCCGTT GCTGAACATTCCGACGATCTCGAGAGGGACCGCAAATTTGTTCGGGTTGGGTTCGATCCTGATCGGAAAAGAGAAGAAGAGCAGAAAGTGA
AA sequence Show only first row Show all	>Lus10009633 pacid=23140075 polypeptide=Lus10009633 locus=Lus10009633.g ID=Lus10009633.BGIv1.0 annot-version=v1.0 MCTETEPRFSFSRDLSDHGDESHTPAADSDQHQCRRDADLLRYSSPAADPHTTSDHPFEFRIDSRNGHYPSSSADELFAGGIILPFHLLHRETVISTSSS FVSATHRRTQSFDQLNLLPPPPPQLKKSPAISAATPPPETAEDQPSKPSSKSFWGFKRSTSLSNCDLKKTLISSLPPLLSRSKSTGSVPVPKNPSHKNEI HHHHKPVPHSYSAKSSSSSSSNYAYSFPQKPPLKKKNSYGGGGGGGFSSSSYGHNQYMNGTARISPLLNIPTISRGTANLFGLGSILIGKEKKSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48780			unknown protein		Lus10009633 [exp]	0	1
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024875 [exp]	2.0	0.9306
AT1G27500			Tetratricopeptide repeat (TPR)...		Lus10002376 [exp]	3.0	0.9337
AT5G17600			RING/U-box superfamily protein...		Lus10013618 [exp]	6.8	0.8994
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10039078 [exp]	9.5	0.9187
AT3G53010			Domain of unknown function (DU...		Lus10001129 [exp]	12.0	0.8990
AT5G26330			Cupredoxin superfamily protein...		Lus10041211 [exp]	12.1	0.9302
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10027822 [exp]	13.4	0.9091
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	14.3	0.9257
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	15.0	0.9121
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10005051 [exp]	15.4	0.9107

Compare expression of checked genes

Lus10009633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.