Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48790 503 / 1e-174 AMSH1 associated molecule with the SH3 domain of STAM 1 (.1) AT4G16144 347 / 6e-114 AMSH3 associated molecule with the SH3 domain of STAM 3 (.1) AT1G10600 160 / 8e-46 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009006 [exp] 999 / 0 AT1G48790 589 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10036454 [exp] 353 / 6e-116 AT4G16144 645 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Lus10030875 [exp] 168 / 2e-48 AT1G10600 311 / 2e-108 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Lus10030613 [exp] 134 / 2e-35 AT1G10600 253 / 5e-85 associated molecule with the SH3 domain of STAM 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045800 [exp] 573 / 0 AT1G48790 581 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Potri.010G141100 [exp] 377 / 1e-125 AT4G16144 697 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Potri.010G041200 [exp] 125 / 4e-33 AT1G10600 256 / 3e-87 associated molecule with the SH3 domain of STAM 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10009634 pacid=23140049 polypeptide=Lus10009634 locus=Lus10009634.g ID=Lus10009634.BGIv1.0 annot-version=v1.0 ATGAGGCCAGCTCATTCGTCTTCAGACAGGATCAATGTTGCTGCCAGTGCCCGAAGACTGGATGTCGACCATCGGATTTCCCTCCGGTTCTATTACCGGA TCGCCGATAATATTCTTCGCCAGGCTTACATCTTTCGAGAAGAGAAGAACATAATCGATCTTTACATCATGCTTCTGAGGTTCTCAAGCTTGGTTTCAGA AACAATACCATGTCATCGAGAGTTCAGGTCATCTTCTCAGACTAAAAAACTCTCTTTGAAAAAGCAACTATTGGGTGCGGTGCAAGAGCTTGAGAAACTG AAGCCAGCAGTACAACAGAAGATCAATGAGTTGAACCATAACCACACTTATCAAGTAAATGGCCAGTCACGTAATATTCAAAGCAATGCATCGCAGTGGC CTTCTGTTCCAACAAAACCTATCACAAGCTATGATTTTACTAAGGCAATAAGACCCATTGCTCAGGCATCTAGTTTGCAACGTCCCAGCATTCTGCAAGG TTCACTTGCTAGGCCAGTTGCCGAACAGTTTGGCAAAATGTCCTTAAGCTTCCCACGCCCGAAGGATGAGACTCTTTCAAAACACTCTATATTTGGTCCG AATGGATTATATGGAAACTGGCAGCCACCTTCAACTGATAAAAGAGTCCAATATCCCAGCAACATAGACCTGACACCTGTTGAAATTCCAAGCTTACAGG AGTCGATGACTAATGGACTTCTAGTGAAAAAGGATTCTAATGATTCAAGAATTGGCAGCTTGGAACAGTCACTAGGAAATGGATTCCCACAAAAATCAGA TTCGAGAATTTCGGAGCCTCAAAGTTCAACTGCAGAATTGGTACTGACTGCAGGTGAAGTAAATCAGGGCTGTCAAACAGAAGAACCGAACCCCATGATT TCCTTTGAGACCCAAGATGCCCCAGTACATACAGATATTGTTAGACAGCCTTCTCCGCCAGCAGTACTTGCTGAAGTACAAGATTTGATCCCAGTCACGT CTCCACAAGTTACTGAGCCAGAATGTAAGATGGACATTTCCTCACCAGATGTTCGTAAGGATCCCTTACAACTGCACATTTCAACCACGATGATGGAAAG TTTCATGAAGCTGGCCAAGAAAAACACTGATAACAATTTGGAAACTTGCGGTATCCTCGCTGGTTCTCTTAAAAACAGGAAGTTCTACATTACAGCTCTC ATCATACCGAAGCAGGAATCTACATCAGACTCTTGTCAGGCTACAAATGAAGAGGAAATTTTCGAAGTGCAGGATAAGCGGTCTCTTTTCCCACTCGGCT GGATTCATATTATGTTGCCTGAATCTGTTGCGATCGTCATGGCACCACGAGATTCTTCGAGGCAAGTATTCTCATCCTCTAAAGCTACCTCAATTTTTTC TGTGCGAGAGAGCTTTTCAACTCATCCTGTTTTCCCCCATCTCCCCGGTTGCAGGAAACATGGAATCTTCCGGCTGACTACACCAGGAGGCATGTCAGTG ATAAGGCAGTGCCAGCAACGCGGGTTCCATCCCCACGATCCGCCTCCAGATGGCGGACCGATCTACGATACATGTACAGACGTGTATATGAATCCTACCC TCAAGTTCGATGTCATCGATCTCCGGTGA
AA sequence Show only first row Show all	>Lus10009634 pacid=23140049 polypeptide=Lus10009634 locus=Lus10009634.g ID=Lus10009634.BGIv1.0 annot-version=v1.0 MRPAHSSSDRINVAASARRLDVDHRISLRFYYRIADNILRQAYIFREEKNIIDLYIMLLRFSSLVSETIPCHREFRSSSQTKKLSLKKQLLGAVQELEKL KPAVQQKINELNHNHTYQVNGQSRNIQSNASQWPSVPTKPITSYDFTKAIRPIAQASSLQRPSILQGSLARPVAEQFGKMSLSFPRPKDETLSKHSIFGP NGLYGNWQPPSTDKRVQYPSNIDLTPVEIPSLQESMTNGLLVKKDSNDSRIGSLEQSLGNGFPQKSDSRISEPQSSTAELVLTAGEVNQGCQTEEPNPMI SFETQDAPVHTDIVRQPSPPAVLAEVQDLIPVTSPQVTEPECKMDISSPDVRKDPLQLHISTTMMESFMKLAKKNTDNNLETCGILAGSLKNRKFYITAL IIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHIMLPESVAIVMAPRDSSRQVFSSSKATSIFSVRESFSTHPVFPHLPGCRKHGIFRLTTPGGMSV IRQCQQRGFHPHDPPPDGGPIYDTCTDVYMNPTLKFDVIDLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48790		AMSH1	associated molecule with the S...		Lus10009634 [exp]	0	1
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	1.0	0.9673
AT2G30880			Pleckstrin homology (PH) domai...		Lus10020739 [exp]	4.2	0.9321
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	5.0	0.9215
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	5.9	0.9199
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	7.5	0.9265
AT4G28260			unknown protein		Lus10018587 [exp]	8.9	0.9197
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10003119 [exp]	9.8	0.9041
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10041216 [exp]	11.0	0.9186
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	11.0	0.8991
AT5G09850			Transcription elongation facto...		Lus10003853 [exp]	12.5	0.9098

Compare expression of checked genes

Lus10009634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.