Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50500 1093 / 0 ATVPS53, HIT1 HEAT-INTOLERANT 1, ARABIDOPSIS THALIANA VPS53 HOMOLOG, Membrane trafficking VPS53 family protein (.1.2) AT1G50970 459 / 2e-153 Membrane trafficking VPS53 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009007 [exp] 1316 / 0 AT1G50500 1308 / 0.0 HEAT-INTOLERANT 1, ARABIDOPSIS THALIANA VPS53 HOMOLOG, Membrane trafficking VPS53 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023000 [exp] 1190 / 0 AT1G50500 1263 / 0.0 HEAT-INTOLERANT 1, ARABIDOPSIS THALIANA VPS53 HOMOLOG, Membrane trafficking VPS53 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04100 [flax] [poplar] Vps53_N Vps53-like, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10009635 pacid=23140068 polypeptide=Lus10009635 locus=Lus10009635.g ID=Lus10009635.BGIv1.0 annot-version=v1.0 ATGGACAAGTCTAGTGCGCTGGAGTACATAAACCAGATGTTTCCTACAGAGGCATCTTTATCTGGTGTCGAGCCACTGATGCAAAAGATTCACAGTGAGA TACGCCGCGTAGATGCAGGCATACTTGCAGCCGTTCGCCAACAGAGCAACTCCAGAACCAAAGCCAAAGAAGATCTTGCAGCTGCTACAGGTGCTGTGGA GGAACTCATGTTCAAGATTCGAGAAATAAAGACCAAAGCTGAGCAAAGTGAAACAATGGTCCAGGAGATTTGCCGTGACATTAAGAAGCTGGACTTTGCA AAGAAACATATCACAACCACGATTACTGCACTTCATCGTCTTACTATGCTAGTGTCAGCTGTTGAACAACTTCAAGTTATGGCTTCAAAACGAAATTACA AAGAAGCAGCTGCTCAGCTGGAGGCTGTAAACCAATTGTGTAGTCACTTTGAAGCCTACAGGGATATACCAAAGATTATGGAGCTCAGGGAGAAGTTCAA AAATATCAAACAAATACTCAAATCTCATGTATCTTCCGACTTCTCTAGCTTGGGTACTGGAAAAGAGACCGAAGAAACGAATTTGCTACAGCAGTTATCT GATGCATGTTTGGTGGTTGACGCTTTGGAGCCATCTGTTAGAGAAGAGTTGGTTAATAATTTCTGTAGCAGGGAGCTTACTTCATATGAACAGATATTTG AAGGAGCTGAACTAGCGAAGCTGGATAAAACTGAACGAAGATATGCATGGATTAAACGTCGGATCAGAACAAATGAGGAGATTTGGAAGATCTTCCCACT ATCATGGCATGTTCCTTATCGTCTCTGCATCCAGTTCTGCAAGAAAACAAGGAAACAACTAGAGGGAATACTTGAAAATCTCAAGGATAAGCCTGATGTT GGAGCTCTGTTACTGGCCCTACAACGAACTCTAGAATTTGAAGATGAACTGGCAGAGAAATTTGGGGGTGGTTCTCAGAAGGAGGTTGGGAATGAGATAG AAGAAATAGGTAGAGAAAATAACAGCCAAACTGTTTCCGATATTCGGAAAAAGTATGAAAGAAAGCTAGCAGTACATCAGGAAAACGAAGGCGATGAAAA AGATGGACATAGAGATTTGTCAGCGCCTGCAGCTGGGCTACGTGGAACTAGAGCAGAAGACACTGATGGAGAATCTGGAGAAACTTGTTCAGGTAACGTG AGATCAAAGCCTGTAACTTGTGCATTTTTCAGTGGCCACTGTGCTTGCTACCCCATTTTAATTTTAACGCCTTCCTTTCAGGAGGAAAAGTGGGATATCG AAGAGGGTAGTCAGAACAATGTTTTATCTAGTAGCATGCAGCTGTTTCTCATCATTAAGAGGAGCTTAAAACGTTGCAGTGCTCTAACAAAGAGCCAGAC TCTGCTCAACCTGTTCAGGGTATTTGAAAAAATTCTCAAAGCTTATGCTGCAAAGCTCAAGGCAAAATTGCCCAAGGGTGGTGTGGGAATTGTTGCAGCA GCTACGGGTATGGATGGGCAGATAAAGACATCTGATAGGGATGAAAGGGTGATTTGCTATATCGTCAATTCAGCTGAATACTGCAGAAATACATCAGGTG AGCTGGCTGAAAGCGTATCAAGAATAATAGATCCTCAACTTGCAGCTGGTGCAGATATGTCCGCCGTAGAAGAAGAGTTCTCTGGACTTATAACGGAGGC ACTAATGACCTTGGTGCATGGCTTGGAAACTAAGTTTGATGTTGAAATGGCTGCAATGACACGTGTTCCCTGGGCTACACTTGAAAGTGTCGGTGATCAA TCCGGGTATGTCAATGGCATAAATATGATCCTAACAAGCAGCACTCCTGTGCTTGGGAGCCTCCTCGCACCCGTTCACTTCCAATACTTCTTGGACAAGC TTGCGTCATCTCTTGGTCCACGATTCTACACCAACATTTTCAAGTGCAAACAGATATCTGAAACTGGAGCACAACAGATGCTTCTAGATACCCAAGCTGT GAAGACAATTCTTCTTGAGATTCCAGTCCTTGGTCGGCAGATGTCTAGTGCTGCCAGCTATTCGAAGTTTGTTAGCCGTGAAATGAGTAAAGCCGAAGCA CTTTTGAAGGTTATTCTTTCCCCGGTTGATTCCGTGGCTGATACATATAGAGCGTTATTACCAGAGGGAACGCCAATGGAGTTCCAGCGAATTTTGGAGC TCAAGGAAGAAGCAACTCGGAATTGGTTTGACAGAGTTGCAGCTCGATGGGCATACCGGCTGACCCAGGTAGTTCCTACCATGCTTAACAGGCTCAATAA GGATGTTAATCATTCCGGTTGTAACGGTTGTATGAGGTTCTATTTTTCTGCAGAAACGATTGTCTCATGCAAATCTATATCTGATGGAATTGTCTTCCGA TAG
AA sequence Show only first row Show all	>Lus10009635 pacid=23140068 polypeptide=Lus10009635 locus=Lus10009635.g ID=Lus10009635.BGIv1.0 annot-version=v1.0 MDKSSALEYINQMFPTEASLSGVEPLMQKIHSEIRRVDAGILAAVRQQSNSRTKAKEDLAAATGAVEELMFKIREIKTKAEQSETMVQEICRDIKKLDFA KKHITTTITALHRLTMLVSAVEQLQVMASKRNYKEAAAQLEAVNQLCSHFEAYRDIPKIMELREKFKNIKQILKSHVSSDFSSLGTGKETEETNLLQQLS DACLVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIWKIFPLSWHVPYRLCIQFCKKTRKQLEGILENLKDKPDV GALLLALQRTLEFEDELAEKFGGGSQKEVGNEIEEIGRENNSQTVSDIRKKYERKLAVHQENEGDEKDGHRDLSAPAAGLRGTRAEDTDGESGETCSGNV RSKPVTCAFFSGHCACYPILILTPSFQEEKWDIEEGSQNNVLSSSMQLFLIIKRSLKRCSALTKSQTLLNLFRVFEKILKAYAAKLKAKLPKGGVGIVAA ATGMDGQIKTSDRDERVICYIVNSAEYCRNTSGELAESVSRIIDPQLAAGADMSAVEEEFSGLITEALMTLVHGLETKFDVEMAAMTRVPWATLESVGDQ SGYVNGINMILTSSTPVLGSLLAPVHFQYFLDKLASSLGPRFYTNIFKCKQISETGAQQMLLDTQAVKTILLEIPVLGRQMSSAASYSKFVSREMSKAEA LLKVILSPVDSVADTYRALLPEGTPMEFQRILELKEEATRNWFDRVAARWAYRLTQVVPTMLNRLNKDVNHSGCNGCMRFYFSAETIVSCKSISDGIVFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009635 [exp]	0	1
AT4G23460			Adaptin family protein (.1)		Lus10024654 [exp]	3.0	0.9293
AT1G31780			unknown protein		Lus10037281 [exp]	3.7	0.9337
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	4.0	0.9353
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10038504 [exp]	5.0	0.8928
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	6.3	0.9161
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10042843 [exp]	7.5	0.9189
AT5G07740			actin binding (.1)		Lus10015724 [exp]	8.9	0.9186
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	11.8	0.9047
AT3G27325			hydrolases, acting on ester bo...		Lus10032122 [exp]	13.4	0.9175
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016373 [exp]	15.4	0.9162

Compare expression of checked genes

Lus10009635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.