Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30720 109 / 1e-28 FAD-binding Berberine family protein (.1) AT1G30730 108 / 3e-28 FAD-binding Berberine family protein (.1) AT1G30700 108 / 3e-28 FAD-binding Berberine family protein (.1) AT1G34575 104 / 9e-27 FAD-binding Berberine family protein (.1) AT4G20860 104 / 9e-27 FAD-binding Berberine family protein (.1) AT5G44400 104 / 9e-27 FAD-binding Berberine family protein (.1) AT1G30710 102 / 6e-26 FAD-binding Berberine family protein (.1) AT1G30760 96 / 8e-24 FAD-binding Berberine family protein (.1) AT1G26420 96 / 9e-24 FAD-binding Berberine family protein (.1) AT4G20840 96 / 9e-24 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009009 [exp] 201 / 1e-62 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 160 / 1e-47 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 130 / 5e-36 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10023373 [exp] 116 / 3e-32 AT1G34575 283 / 2e-92 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 112 / 2e-29 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023369 [exp] 102 / 2e-28 AT1G30710 156 / 4e-46 FAD-binding Berberine family protein (.1) Lus10038440 [exp] 106 / 2e-27 AT1G11770 403 / 4e-135 FAD-binding Berberine family protein (.1) Lus10023366 [exp] 105 / 3e-27 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10023365 [exp] 102 / 4e-26 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158300 [exp] 145 / 5e-42 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462300 [exp] 122 / 5e-35 AT1G30700 316 / 6e-106 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 125 / 2e-34 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 122 / 2e-33 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462532 [exp] 117 / 3e-33 AT1G30700 306 / 5e-102 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 122 / 4e-33 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 119 / 4e-32 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 118 / 8e-32 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162732 [exp] 117 / 2e-31 AT4G20820 534 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 113 / 4e-30 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009639 pacid=23140060 polypeptide=Lus10009639 locus=Lus10009639.g ID=Lus10009639.BGIv1.0 annot-version=v1.0 ATGGAGCTCGAAGTCGTGAAGATGGGGTTCAATCCTTACGGAGGGAAACTGAGCGAGATATTCCCTGAAGCGACGCCGTTTCCTCACTGGGCCGGGAATC TGGCCAAGATTCAGTACCAAACGAGCTGGACCGATCACGGGTCCGAGCCCGTGAGGCACCATTTGGATTCGTTACGAGAGATGTACGATTACATGACTCC TTACGTTTCGAGCTCCCCCAGGAGTGCGTTTGTGAACTATATCGATCTCGATCTGGGGACTAACAGCCACCTCCGCGAGTCGAGGTACGAGGAAGCGAGG CGTTACGGGCTCAGCTACTTCAAGGGAACTTCGAGAGGTTGGTTAAGATCAATAGCAGGGTGGATCCCGGCAATGTGTTTCGATCTGAGCAGAGTGTTCC GATTTTCCCTCAACCCAAATTATGACGTAGTTTTGGCGACATGA
AA sequence Show only first row Show all	>Lus10009639 pacid=23140060 polypeptide=Lus10009639 locus=Lus10009639.g ID=Lus10009639.BGIv1.0 annot-version=v1.0 MELEVVKMGFNPYGGKLSEIFPEATPFPHWAGNLAKIQYQTSWTDHGSEPVRHHLDSLREMYDYMTPYVSSSPRSAFVNYIDLDLGTNSHLRESRYEEAR RYGLSYFKGTSRGWLRSIAGWIPAMCFDLSRVFRFSLNPNYDVVLAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30720			FAD-binding Berberine family p...		Lus10009639 [exp]	0	1
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	16.2	0.7892
					Lus10020479 [exp]	19.1	0.7053
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	28.9	0.7243
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031231 [exp]	42.0	0.7158
AT5G17680			disease resistance protein (TI...		Lus10012852 [exp]	71.3	0.6644
AT3G12960			unknown protein		Lus10011871 [exp]	90.1	0.6898
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10000519 [exp]	92.1	0.7240
AT1G74320			Protein kinase superfamily pro...		Lus10024127 [exp]	111.6	0.7050
AT2G23560		ATMES7	ARABIDOPSIS THALIANA METHYL ES...		Lus10000840 [exp]	283.0	0.6582

Compare expression of checked genes

Lus10009639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.