Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18215 182 / 6e-58 Protein of unknown function, DUF599 (.1) AT5G24600 145 / 2e-43 Protein of unknown function, DUF599 (.1.2) AT4G31330 73 / 1e-15 Protein of unknown function, DUF599 (.1) AT5G24790 67 / 1e-13 Protein of unknown function, DUF599 (.1) AT5G10580 67 / 2e-13 Protein of unknown function, DUF599 (.1.2) AT5G46060 50 / 3e-07 Protein of unknown function, DUF599 (.1) AT5G43180 44 / 2e-05 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009010 [exp] 275 / 3e-94 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10015590 [exp] 155 / 8e-47 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10032916 [exp] 154 / 2e-46 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10005272 [exp] 140 / 1e-40 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 138 / 3e-40 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10026976 [exp] 77 / 4e-17 AT4G31330 347 / 2e-122 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 69 / 3e-14 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10005266 [exp] 69 / 6e-14 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10013944 [exp] 56 / 1e-09 AT5G46060 100 / 3e-31 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G001300 [exp] 151 / 9e-46 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 149 / 1e-44 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.006G278000 [exp] 80 / 3e-18 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 67 / 3e-13 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.011G059400 [exp] 58 / 3e-10 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10009640 pacid=23140079 polypeptide=Lus10009640 locus=Lus10009640.g ID=Lus10009640.BGIv1.0 annot-version=v1.0 ATGGAGGAATCTGAGCTGGATTTCGTGCTAGTCCCGTTAGGATTACTGGTGATGCTACTGTACCACAGCTGGCTTCTCTTCACGATCCTCAACCATCCGA CTCGCACAGTGATCGGGATCAACTCTCAGTTTCGCCACCAGTGGGTTCACACCTTGATGACTGACCCGTTGAAGAACGGAGTTCTAGCAGTGCAAACCCT GCGGAACAACATCATGGCATCAACGCTCTTAACAACGACAGCCATCACTCTCGCTGATCAGCGTGTTCGTCAGCAGCAAATCGAACTCGACAAACTCGGG GCAGCAGCTCGTATACGGTACTACGCGCACGTCAGCTTCCTAGCCACCATACCGGCGTCCTCGTCGAGCAAAGGCTCGATCGACTACGTTGCTCGACACC TGAACCGAGGGAGCTTCTTCTGGTCGCTCGGGCTTCGAGCTTATTACTTTTCGTTCCCTCTGTTCTTGTGGGTGTTCGGTCCTATACCGATGTTCGTCTG CCGCTGGATAATGTGCTTTACGCTGTATTTTCTCGATACTACGAGTTTTATGAGGCTGCTTCACTCTCACTCGGTTAAGTTGAAGACCGATCTTGCTGAT GCCGAATCGGTCTGA
AA sequence Show only first row Show all	>Lus10009640 pacid=23140079 polypeptide=Lus10009640 locus=Lus10009640.g ID=Lus10009640.BGIv1.0 annot-version=v1.0 MEESELDFVLVPLGLLVMLLYHSWLLFTILNHPTRTVIGINSQFRHQWVHTLMTDPLKNGVLAVQTLRNNIMASTLLTTTAITLADQRVRQQQIELDKLG AAARIRYYAHVSFLATIPASSSSKGSIDYVARHLNRGSFFWSLGLRAYYFSFPLFLWVFGPIPMFVCRWIMCFTLYFLDTTSFMRLLHSHSVKLKTDLAD AESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18215			Protein of unknown function, D...		Lus10009640 [exp]	0	1
AT2G28060			5'-AMP-activated protein kinas...		Lus10008427 [exp]	2.8	0.9017
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10008489 [exp]	3.0	0.9054
AT1G55200			Protein kinase protein with ad...		Lus10041608 [exp]	7.2	0.8923
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039456 [exp]	10.5	0.8843
					Lus10033298 [exp]	10.7	0.8748
					Lus10019353 [exp]	11.4	0.8835
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	12.0	0.8889
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10001223 [exp]	12.0	0.8616
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10035893 [exp]	12.8	0.8843
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10012040 [exp]	13.4	0.8788

Compare expression of checked genes

Lus10009640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.