Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17980 775 / 0 PAPS1 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) AT4G32850 652 / 0 PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), nPAP, PAP(IV), PAP(IV), PAP(IV), PAP poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase AT2G25850 651 / 0 PAPS2 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) AT3G06560 253 / 2e-75 PAPS3 poly(A) polymerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009011 [exp] 1227 / 0 AT1G17980 857 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10021643 [exp] 971 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10034723 [exp] 954 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10006029 [exp] 670 / 0 AT4G32850 911 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10006844 [exp] 633 / 0 AT4G32850 815 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10037589 [exp] 622 / 0 AT2G25850 818 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Lus10005490 [exp] 597 / 0 AT4G32850 769 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043200 [exp] 898 / 0 AT1G17980 871 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Potri.006G235400 [exp] 681 / 0 AT4G32850 909 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Potri.018G057200 [exp] 676 / 0 AT2G25850 920 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Potri.008G102500 [exp] 258 / 1e-77 AT3G06560 573 / 0.0 poly(A) polymerase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04926 [flax] [poplar] PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain PF04928 [flax] [poplar] PAP_central Poly(A) polymerase central domain
Representative CDS sequence Show only first row Show all	>Lus10009641 pacid=23140058 polypeptide=Lus10009641 locus=Lus10009641.g ID=Lus10009641.BGIv1.0 annot-version=v1.0 ATGGGGTCAGTAGGATTAAGCAACTGGCCTAATGGACAGCAGCCAAGGTTAGGCATTACTGATCCTATATCTCTGAGTGGACCGTCGGAGTACGATGTGA CGAAGACTCGGGAGCTTGAACAGTATCTTCAAGATGCAAACTTGTACGAGAGTAGAGAGGAAGCTGTTTCGAGGGAAGAAGTGCTTGGGCGGCTAGACCA GATTGTCAAGAACTGGGTGAAAGTAATTAGTCGCAACAAAGGGTTGAATGAGCAATTGGTTCATGAAGCAAATGCGCTAGGGGTGCATAGCCCGGGTGCC GATATAGACACACTTTGTGTGGGACCTAGACGCGAGGATTTCTTTGGAGAATTGCAAAACATGCTCTCGGAGATGCTTGAAGTAACGGAGTTGCACCCTG TCCCTGATGCTCATGTTCCAGTCATGAAATTCAAATTCAAAGGAGTTTCTATAGATTTACTCTATGCTAAGTTGTCTTTGTGGACCATTCCTGAAGATCT TGATATTTCACAAGACTCGATATTACAAAATACCGACGAGCAGTCTGTTCGTAGTCTTAACGGTTGCAGGGTCACTGACCAGATCTTGCGTCTGGTTCCA AATATTAAGAACTTTCGAACAACCTTGCGCTGCATGAGGTTTTGGGCAAAGCGGCGTGGTGTATATTCAAACGTTGCTGGGTTTCTTGGTGGTATCAATT GGGCATTACTTGTAGCTCGCATTTGCCAGCTGTTTCCGAATGCATTTCCCAACATGCTGGTGTCTCGATTCTTCAGAGTTTTCACTCAGTGGCGGTGGCC GAATCCTGTCATGCTTTGCGCTATAGAGGATAGCTCCCTTGGCCTTCAGGTTTGGGACCCGAGAAGAAACCACAAGGATAGATATCACCTGATGCCTATA ATCACTCCAGCATACCCGAGTATGAATTCCAGCTATAATGTCTCTACAAGCACTCTGCGGATCATGTCTGAAGAGTTTCAGAGAGGAAATGAGATATGCG AGGCTATGGAAGCAAACAATGCAAACTGGGACACCCTCTTCGAGCCGTTTACTTTCTTCGAAGCATACAAGAACTATCTGCAAGTAAATATAGGGGCAGA AAACGAAGATGACTTGCGGAACTGGCAAGGTTGGGTTGAATCCCGTCTCCGTATCCTAATGTTGAAGATTGAGAAGTACACTTACAATATGCTTCAGTGT CATCCACACCCAGGGGAGTTTTCCGACAAATCGAAGCCCTTACACTACTGCTATTTCATGGGCTTGCAACGTAAACAAGGAGTTACTGCCAACGAAGGCG GGCAGTTCGATATAAGGGAGACTGTCAACGAATTTAAACACACGGTCAATATGTACACAATGTGGAAGCCCGGAATGGAGATCCAGGTCACCCATGTGAA ACGAAGGAGCATACCGAGCTTTGTTTTCCCTGGTGGAGTTCGTCCATCTCGTCCGGCTAGAACAACGTGGGATAGCAAGCGCAGTTTGGAAGCTAAGGCT TCCGGCAAGTCATCTGAAGGCGAAGGAGGAAGCGGCGGATCAGACGAAAGGAAGAGAAAACGTATAGAGGATAATTCGGAGGATAATGCAGGTGTTAAGT GCTTGGCCACAGCCTTATCTTCATCCATTGAAGAAAATGGAGATAGTCCTCCTGTAAGAGTCCCTGTAAGTGCGAACCAGTCCGGGAAATCAAGCTGGGA ACAGGAGTATCTTGCGAGCTCAGCAGACCTAAAAGCCGCCATTGATCATGTCCCCAACGGCCTCGAGAGATCAAGTTCAATAGAGGTTGAGAAGTTGGCG GTTGAGGAAATGATGTCTGGACCGTATGATAGCCATCAAGCTTCACCGCTGCAAGAAATCGAGGAGCTTGAAGATGACAAGGATTCAGCAAGGAATAATG ACAAAGGTAGTCCCGTGGAGTCTTCTTCGACTTCTAGTAAAACAGCTGTGTCCACAATCACAAATTCACCTCCGGTGATACCGTTAGCATCTTGCAGTGG AGTTGTTTCATCGAAGTTTCCCTGCTCTCATGGAACTTTCGACGAGCTTGAGCCTGCTGAACTCGTTGCACCATCTCCAGCAGCACCCGTTGCAGTGCGA AAGCCCCTCATCAGTGGTACATTGTTGCAGGTTGAACTTCACTTCACTGGGGAAAACTCATTAGCCCTCATCTTACCAGCTATTCCGAGAAGGGGTGGCC TATTCGAGAGAGGAAGTCTTGCAGCCAAAGTGAACTTCGCGGCTTCTGCAACGAGATGA
AA sequence Show only first row Show all	>Lus10009641 pacid=23140058 polypeptide=Lus10009641 locus=Lus10009641.g ID=Lus10009641.BGIv1.0 annot-version=v1.0 MGSVGLSNWPNGQQPRLGITDPISLSGPSEYDVTKTRELEQYLQDANLYESREEAVSREEVLGRLDQIVKNWVKVISRNKGLNEQLVHEANALGVHSPGA DIDTLCVGPRREDFFGELQNMLSEMLEVTELHPVPDAHVPVMKFKFKGVSIDLLYAKLSLWTIPEDLDISQDSILQNTDEQSVRSLNGCRVTDQILRLVP NIKNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLFPNAFPNMLVSRFFRVFTQWRWPNPVMLCAIEDSSLGLQVWDPRRNHKDRYHLMPI ITPAYPSMNSSYNVSTSTLRIMSEEFQRGNEICEAMEANNANWDTLFEPFTFFEAYKNYLQVNIGAENEDDLRNWQGWVESRLRILMLKIEKYTYNMLQC HPHPGEFSDKSKPLHYCYFMGLQRKQGVTANEGGQFDIRETVNEFKHTVNMYTMWKPGMEIQVTHVKRRSIPSFVFPGGVRPSRPARTTWDSKRSLEAKA SGKSSEGEGGSGGSDERKRKRIEDNSEDNAGVKCLATALSSSIEENGDSPPVRVPVSANQSGKSSWEQEYLASSADLKAAIDHVPNGLERSSSIEVEKLA VEEMMSGPYDSHQASPLQEIEELEDDKDSARNNDKGSPVESSSTSSKTAVSTITNSPPVIPLASCSGVVSSKFPCSHGTFDELEPAELVAPSPAAPVAVR KPLISGTLLQVELHFTGENSLALILPAIPRRGGLFERGSLAAKVNFAASATR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	0	1
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10000498 [exp]	4.5	0.6548
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	9.9	0.6810
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10013837 [exp]	12.4	0.6075
AT5G24970			Protein kinase superfamily pro...		Lus10020103 [exp]	12.6	0.6554
AT4G33490			Eukaryotic aspartyl protease f...		Lus10033503 [exp]	15.5	0.6734
AT3G62010			unknown protein		Lus10038011 [exp]	17.0	0.6426
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10037846 [exp]	17.5	0.6521
AT5G18610			Protein kinase superfamily pro...		Lus10015051 [exp]	20.8	0.6494
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Lus10011319 [exp]	27.4	0.5837
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10015050 [exp]	29.8	0.5865

Compare expression of checked genes

Lus10009641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.