Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18030 469 / 1e-166 Protein phosphatase 2C family protein (.1.2) AT2G25620 154 / 2e-43 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT5G10740 142 / 3e-39 Protein phosphatase 2C family protein (.1) AT5G24940 142 / 2e-38 Protein phosphatase 2C family protein (.1) AT3G51470 139 / 9e-38 Protein phosphatase 2C family protein (.1) AT4G31750 130 / 4e-35 WIN2 HOPW1-1-interacting 2 (.1) AT5G53140 132 / 6e-35 Protein phosphatase 2C family protein (.1) AT2G33700 129 / 6e-34 Protein phosphatase 2C family protein (.1) AT1G43900 129 / 6e-34 Protein phosphatase 2C family protein (.1) AT2G25070 114 / 6e-29 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013124 [exp] 143 / 3e-39 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10008091 [exp] 140 / 5e-38 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10014926 [exp] 131 / 2e-35 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10020104 [exp] 129 / 1e-34 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 127 / 5e-34 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 126 / 5e-34 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 126 / 6e-34 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10030731 [exp] 128 / 1e-33 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10001682 [exp] 127 / 2e-33 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043000 [exp] 510 / 0 AT1G18030 439 / 8e-155 Protein phosphatase 2C family protein (.1.2) Potri.006G267600 [exp] 134 / 2e-36 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 131 / 1e-35 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.015G019200 [exp] 131 / 5e-35 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 129 / 7e-35 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 130 / 1e-34 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.018G033000 [exp] 129 / 4e-34 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.005G186001 [exp] 127 / 4e-34 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.006G248400 [exp] 128 / 9e-34 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.005G102500 [exp] 128 / 1e-33 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10009642 pacid=23140036 polypeptide=Lus10009642 locus=Lus10009642.g ID=Lus10009642.BGIv1.0 annot-version=v1.0 ATGGCAGCCGAAAGCGAAATCCCCAACCCACCAACTGAGAGCGGGAGCTCGAGTCTTCAACCAACTACGAATCACAAGCGCGAGTCGTCGGATCATCCTT CAGAGGAATCATCCGCGGCAGCGAAGAAGCAGAGATTGGACAACGCGGCGGTGAGCGAGGAAGACGATGGGAAGAAGAAACCTAGGGTTTCGGAGGAACA GCAGTGTAAGACGGAGCTGGAGATCGAAGCGGAAGCTTCTGAAGATAAAGGCTCGAGGCACAGCATGGAAGATGCTTGGGTTGTGCTTCTAGATGCTGCC TTGGACTACCCTGGCAAATTGAGATGTTCTCATTTCGCAATTTACGACGGGCATGGCGGGAGATTAGCTGCGGAGTATGCTAAGAAGCATTTGCATGAGA ATGTTCTTTCGGCTGGCTTACCACGTGAGTTGCTGGATGTGAAAGCTGCCAAAAAGGCTATACTTGATGGATTTCGGAAAACAGATGAGTCTCTTCTCCA AGAAAGCGCTTCAGGGGGTTGGCAGGATGGTGCTACAGCTGTTTGTATCTGGCTATTGGGACAAAAAGTATTTGTTGCCAACATCGGTGATTCAAAAGCG GTGTTGGGTCGTTCTACTACGGATGGAACACAAAACCTATCAGAGGGAACAAGCCAACTAAAGGCGATAGTTTTGACAAGGGAACACAAAGCCATATATC CACAGGAACGCTCTCGCATACAGAAGGCTGGTGGAAGTGTGAGTTCAAATGGACGGTTACAAGGTCGCCTTGAAGTTTCGAGGTCTTTTGGAGACCGCAA CTTCAAGAAGGTCGGTGTTAGTGCGATCCCTGATATCCATTCGTTTGAGCTTACAGAGAAAGACCACTTCATCATCCTTGGTTGCGATGGACTCTGGGGT GTATTTGGTCCAAGTGACGCTGTCCAGTTCGTTCAGAAATTATTGAAGGATGGGCTGTCTGCAGCTGCTGTAACCCGCCGGCTAGTGAAAGAAGCTGTTC TCGAGCGGCGTTGCAAAGATAACTGCACTGCCGTTGTCGTTGTTTTAAAGCACAAGTGA
AA sequence Show only first row Show all	>Lus10009642 pacid=23140036 polypeptide=Lus10009642 locus=Lus10009642.g ID=Lus10009642.BGIv1.0 annot-version=v1.0 MAAESEIPNPPTESGSSSLQPTTNHKRESSDHPSEESSAAAKKQRLDNAAVSEEDDGKKKPRVSEEQQCKTELEIEAEASEDKGSRHSMEDAWVVLLDAA LDYPGKLRCSHFAIYDGHGGRLAAEYAKKHLHENVLSAGLPRELLDVKAAKKAILDGFRKTDESLLQESASGGWQDGATAVCIWLLGQKVFVANIGDSKA VLGRSTTDGTQNLSEGTSQLKAIVLTREHKAIYPQERSRIQKAGGSVSSNGRLQGRLEVSRSFGDRNFKKVGVSAIPDIHSFELTEKDHFIILGCDGLWG VFGPSDAVQFVQKLLKDGLSAAAVTRRLVKEAVLERRCKDNCTAVVVVLKHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	0	1
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006018 [exp]	1.0	0.9626
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Lus10020897 [exp]	2.4	0.9255
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	2.4	0.9468
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10003911 [exp]	2.8	0.9292
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	3.5	0.9407
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10001916 [exp]	4.6	0.9246
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10042919 [exp]	5.0	0.9267
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	7.2	0.8938
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	8.7	0.9044
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	8.7	0.9078

Compare expression of checked genes

Lus10009642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.