Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48650 1353 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G01130 1192 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G04895 1153 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G35920 793 / 0 RNA helicase family protein (.1) AT1G58060 501 / 8e-156 RNA helicase family protein (.1) AT1G58050 446 / 9e-136 RNA helicase family protein (.1) AT2G30800 315 / 2e-89 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT1G06670 293 / 9e-82 NIH nuclear DEIH-boxhelicase (.1) AT5G13010 291 / 1e-81 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT4G18465 262 / 5e-75 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009012 [exp] 1852 / 0 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10013479 [exp] 1221 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007938 [exp] 1216 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 1141 / 0 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10034126 [exp] 1141 / 0 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009022 [exp] 754 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 546 / 6e-179 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10029806 [exp] 314 / 5e-90 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10001415 [exp] 313 / 5e-90 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042500 [exp] 1434 / 0 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G117800 [exp] 1263 / 0 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G246000 [exp] 1199 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 1177 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G068900 [exp] 791 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.004G222900 [exp] 468 / 2e-143 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.005G206500 [exp] 302 / 1e-85 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.010G172500 [exp] 267 / 1e-73 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.005G071500 [exp] 198 / 3e-51 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.014G117900 [exp] 191 / 3e-50 AT3G62310 1252 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10009643 pacid=23140076 polypeptide=Lus10009643 locus=Lus10009643.g ID=Lus10009643.BGIv1.0 annot-version=v1.0 ATGCCGTCCTGCTCAGTTATTCTCCACGGATGCTTGAAACCCAGAAAAGTCTTCCGTTCTTTAAGGCCGACTTCCGCCGCTCTTGCTTTGCGCAGTCTTC GAACGACTGTCCGTGTTGCTTCACTGAAGCCTTCGTCATCCATGGCAGCTCTTAGTAATTCCTACTCTTCCTCCTCATCAATTTACTTTCCTCCTCGTTT CCGCGGGAATGGAGCTTCCAACAAGTGTTTCGGCGATGTCAGTGGCAAGGGATTCAAAGGAGCTCCCTTTTCGATCCTAAACTGGAGGATCGCGGCATTG CCGTTGAGTTTGTATCTTCCGAGCTTCAATTACAGCCAGCACGCGTACCGGGAAGAGTCCAGCGATGAGTCTGAGCTGGAATCAGGATCATCTCAGCAGG CTATGAATGGTTCGACGCTTGATTACTTAGAGGATTGGAGATGGAAGCTAACCATGCTTATGCGTAACAAAAGTGAGCAAGAAGTTGTTTCCAGGGAAGA AAAGGACCGACGAGATTTTCAGCAAATCTCTGCTATTTCTGATCGAATGGGATTATATAGCCATCAGTATCCCGGAGGAATCGTCATTAGCAAGAGTCCT CTGCCGAACTACCGGCCTGATTTGGACGATAACCTTCCGATTAGGAAGGTGGTGTTACCTTCCGGACTTCATAGGGAAGTTTCGACTCATCTCCATTCGC ACCTTTCCAAGAAGCCTACTAACAGGGGAGGCCCTTTTAGTTCATCTTTGGGGACCAGTAGTTTGGATTCTGAAGAGACGTTGTATGACGAGCGGGAGCC TGTTGTACTGAGTAATGATACAAAAGAAAGAGTCTTTCGAGGGAGAAGTTTGCAAATGCGTAGCCGGCAGCAGGAATGGAAGGAATCTCTCGAGGGACAA AAGAGGACTCAGTTTCGAGAAAGCCTTCCTGCATACAAAGAAAGAGATGCATTATTGAAATCTCTTGCTGAAAATCAGGTCACGGTCGTGTCAGGGGAAA CAGGTTGTGGAAAAACGACACAGTTGCCTCAGTACATACTCGAATCGGAAATTGATGCAGCTCGTGGCGCTGTCTGTAATATTATATGTACTCAGCCTAG AAGAATATCCGCTATGGCTGTTGCTGAAAGAGTTGCTGCCGAAAGAGGAGAGAAAATCGGTGAATCAGTTGGTTATAAGGTTCGTCTGGAGGGCATGAAA GGGAAAGATACGCGTCTCCTTTTCTGTACCACCGGGGTGTTGTTAAGGAGATTACTTCTTGATAGGAACTTGAGAGGAGTAACTCATGTTATTGTGGATG AAATTCATGAGCGAGGAATGAATGAAGATTTCCTTCTAATTGTTCTGAGGGATCTCCTTCCTCGTCGACCTGAGCTGAGGTTGGTTTTGATGAGTGCAAC ACTCAATGCGGAGCTTTTCTCCTCTTATTTCGGCGGTGCTCCAACGCTCCACATTCCTGGTTTTACATACCCAGTACGCCAGCACTTCCTAGAGAATATT TTAGAAACAATCAGATACAGGTTAACTCCAGATAATCAAATCGACGATTACGGCCAAGAAAAGACACGGAAAATGCAAAAACAAGCTCAAATGTTTGGTG AAAAGAGGAAGAGCCAGATTGCTTCTGCTGTGGAGGATACACTTAAAGCTACTGACTTCAGAGGTTACAGCAGCCTCACTCAGCAATCCTTATCCATTTG GAATCCTGACTCGATCGGGTTTAACCTCATCGAGCAAGTCCTTCGTCACATTGTAAAGAATGAGAGGCCCGGTGCTGTGTTGGTGTTCATGACTGGCTGG GATGACATCAACTCTTTAAAGGATAAGCTCGGGTTTCACCCGGTCTTAGGAGACCAAAGCAAAGTTTTATTACTTGCATGCTACGGCTCCATGGCCAGTT CTGAGCAGAGGTTGATCTTTGATAAGCCAAAAGATGGTGTGAGGAAAATTGTTCTAGCCACGAACATGGCCGAGACTAGTATCACCATCAACGATGTAGT ATTTGTCGTTGATTGTGGCAAAGCCAAAGAATCATCATATGATGCATTGAACAATACGCCGTGTTTGCTTCCTTCCTGGATTTCGAAAGCTTCTGCTCGA CAAAGAAAAGGAAGGGCTGGTCGTGTACAGCCTGGCGAATGCTATCATCTTTATCCGAGAAGCGTTTACGATGCTTTTGCTGAGTATCAGTTGCCGGAAC TATTGCGCACGCCTTTACACTCCCTCTGTCTACAAATAAAGAATCTACAGCTGGGAAGTATCACCGAGTTCTTATCTCAGGCCTTGCAGCCACCTGAAGC ATTGTCGGTTCAAAATGCTGTTGAATATTTGAAGGTGATTGGGGCCCTAGACGAGAAAGAAAATTTGACAGTGTTAGGTAAGCAGTTGTCAGTGCTGCCA GTTGAGCCCAAGCTTGGCAAAATGCTGATTTTAGGAGCCATATTCAAATGTCTGGACCCAATAATGACCGTGGTCGCTGGTCTAAGTGTCCGAGATCTGT TCTTGATGCCATTCGATACGAAGGATCTGGCGGAGGCTGCGAAAGCTCAACTTGCGGCTAAAAGTTACAGCGACCATCTTACTATAGTTCGGGCTTACGA TGGCTGGAAGAATGCCGAGAGGCAGCAATCTGGTTACGAGTATTGCTGGAAGAACTTCTTGTCAGCTCAGACTCTTAGAGCCATTGAGTCTCTTCGCAAG CAGTTCTACTCTTTGCTCAGGAACGCCAACTTGATCGATCAGGATGTAGAGAACTGTAATGCGTGGAGCCAAGATGTGAATCTTGTACGAGCCGTCATCT GTGCTGGCTTGTCCCCTGGGATTTGTTCTGTTCTGAATACAGAGAAGTCAATAGCGTTGAAGACGATGGAGGACGGTATGGTGCTTCTGTACTCGAGTTC AGTGAACGGAAGTGTACCAAGGATTCCGTACCCATGGTTGGTGTTCAACGGAAAAGTGAAGGTGAATTCCGTCTTTCTTCGGGACTCGACTGCTGTATCT GATTCTGTACTCCTCCTGTTTGGAGGCAGAGTTTCATCTGGTGGACTAGATGGACATTTGAAAATGCTCGGAGGCTACTTGGAATTCATGATGAAGCCCG AATGGGCCGAAACCTTTTTAACTTTGAAGAGTGAGCTTGAAGAGCTCATTCAGAAGAAACTACTTGATCCAAAGTTGGACATGGAGTCCTACTCCGACTT GTTGAGGGCAACCCGCACATTGGTATCAGAAGACCAATGCAAGGGAAGGTTCATATTTCCGAATAGATGGATCACGAATCAATGTTCCGAAGCGGAGGAG AAGCAAGAAGCAAAGTAG
AA sequence Show only first row Show all	>Lus10009643 pacid=23140076 polypeptide=Lus10009643 locus=Lus10009643.g ID=Lus10009643.BGIv1.0 annot-version=v1.0 MPSCSVILHGCLKPRKVFRSLRPTSAALALRSLRTTVRVASLKPSSSMAALSNSYSSSSSIYFPPRFRGNGASNKCFGDVSGKGFKGAPFSILNWRIAAL PLSLYLPSFNYSQHAYREESSDESELESGSSQQAMNGSTLDYLEDWRWKLTMLMRNKSEQEVVSREEKDRRDFQQISAISDRMGLYSHQYPGGIVISKSP LPNYRPDLDDNLPIRKVVLPSGLHREVSTHLHSHLSKKPTNRGGPFSSSLGTSSLDSEETLYDEREPVVLSNDTKERVFRGRSLQMRSRQQEWKESLEGQ KRTQFRESLPAYKERDALLKSLAENQVTVVSGETGCGKTTQLPQYILESEIDAARGAVCNIICTQPRRISAMAVAERVAAERGEKIGESVGYKVRLEGMK GKDTRLLFCTTGVLLRRLLLDRNLRGVTHVIVDEIHERGMNEDFLLIVLRDLLPRRPELRLVLMSATLNAELFSSYFGGAPTLHIPGFTYPVRQHFLENI LETIRYRLTPDNQIDDYGQEKTRKMQKQAQMFGEKRKSQIASAVEDTLKATDFRGYSSLTQQSLSIWNPDSIGFNLIEQVLRHIVKNERPGAVLVFMTGW DDINSLKDKLGFHPVLGDQSKVLLLACYGSMASSEQRLIFDKPKDGVRKIVLATNMAETSITINDVVFVVDCGKAKESSYDALNNTPCLLPSWISKASAR QRKGRAGRVQPGECYHLYPRSVYDAFAEYQLPELLRTPLHSLCLQIKNLQLGSITEFLSQALQPPEALSVQNAVEYLKVIGALDEKENLTVLGKQLSVLP VEPKLGKMLILGAIFKCLDPIMTVVAGLSVRDLFLMPFDTKDLAEAAKAQLAAKSYSDHLTIVRAYDGWKNAERQQSGYEYCWKNFLSAQTLRAIESLRK QFYSLLRNANLIDQDVENCNAWSQDVNLVRAVICAGLSPGICSVLNTEKSIALKTMEDGMVLLYSSSVNGSVPRIPYPWLVFNGKVKVNSVFLRDSTAVS DSVLLLFGGRVSSGGLDGHLKMLGGYLEFMMKPEWAETFLTLKSELEELIQKKLLDPKLDMESYSDLLRATRTLVSEDQCKGRFIFPNRWITNQCSEAEE KQEAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009643 [exp]	0	1
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10032487 [exp]	1.7	0.8373
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	2.0	0.8085
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Lus10007987 [exp]	5.8	0.6983
AT3G56160			Sodium Bile acid symporter fam...		Lus10043384 [exp]	8.5	0.7546
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	11.0	0.7364
AT2G34730			myosin heavy chain-related (.1...		Lus10038540 [exp]	12.0	0.7507
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	12.3	0.7263
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10001023 [exp]	12.4	0.6543
AT5G11810			unknown protein		Lus10003649 [exp]	13.4	0.6951
AT1G31440			SH3 domain-containing protein ...		Lus10034755 [exp]	13.6	0.6807

Compare expression of checked genes

Lus10009643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.